Variant report

Variant	rs8098931
Chromosome Location	chr18:9691348-9691349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9613237..9615569-chr18:9690826..9693390,2	MCF-7	breast:
2	chr18:9690985..9692984-chr18:9695409..9697746,2	MCF-7	breast:
3	chr18:9689518..9692355-chr18:9693264..9695610,2	K562	blood:
4	chr18:9690587..9692144-chr18:9710230..9711771,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154845	Chromatin interaction
ENSG00000263627	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2124297	1.00[CHD][hapmap]
rs3322	1.00[CHD][hapmap]
rs34067459	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34574046	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34667583	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35364932	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35829290	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs36119293	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62078868	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs650464	1.00[CHD][hapmap]
rs66828413	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs68060192	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72953435	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72953449	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955953	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955957	0.92[EUR][1000 genomes]
rs72960096	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8092307	0.84[CEU][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs8092322	0.92[EUR][1000 genomes]
rs8092353	0.87[ASW][hapmap];0.89[CEU][hapmap];0.85[GIH][hapmap];0.86[LWK][hapmap];0.86[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs8092431	0.89[CEU][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs8095937	0.94[CEU][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs8096050	0.87[ASW][hapmap];0.89[CEU][hapmap];0.85[GIH][hapmap];0.86[LWK][hapmap];0.87[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9949213	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv576449	chr18:9623052-9700382	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9685200-9695200	Weak transcription	Spleen	Spleen
2	chr18:9685600-9695800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr18:9685600-9696800	Weak transcription	Right Atrium	heart
4	chr18:9685800-9695200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr18:9686000-9695400	Weak transcription	Fetal Muscle Leg	muscle
6	chr18:9686000-9695600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr18:9686400-9693600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr18:9690600-9691600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr18:9690600-9691600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr18:9690600-9691800	Enhancers	Fetal Stomach	stomach
11	chr18:9690800-9691400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr18:9690800-9691400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr18:9691000-9691400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr18:9691000-9700000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links