Variant report

Variant	rs8101606
Chromosome Location	chr19:35774556-35774557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35769830..35774693-chr19:35781606..35784141,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HAMP-1	chr19:35773420-35776043	NONHSAT065819

Variant related genes	Relation type
ENSG00000105695	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10405246	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10410675	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10414846	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10419261	1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10419959	0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs10421096	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10421504	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10421599	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10421768	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10424619	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1051995	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1052033	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12973672	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12974791	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12975284	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12979058	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12979792	0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12981527	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12984022	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12985618	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12986033	1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13345192	0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2073899	0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280744	1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280745	1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280747	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28365133	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28365136	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832786	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35250673	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35497966	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35959789	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62109572	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62112772	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71352913	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7256866	0.93[ASW][hapmap];0.93[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv911618	chr19:35734107-35807845	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	esv1836312	chr19:35741456-35786868	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	n/a
9	nsv911619	chr19:35749563-35775441	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	n/a
10	nsv911623	chr19:35752917-35775441	Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35761400-35775600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr19:35762800-35780000	Weak transcription	Hela-S3	cervix
3	chr19:35767800-35775800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:35768200-35775600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr19:35768400-35781400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr19:35768800-35781400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:35769200-35775600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr19:35769800-35775600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:35770000-35775600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr19:35770000-35775800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr19:35770200-35775400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr19:35770200-35775600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr19:35770400-35776800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr19:35770800-35775400	Enhancers	Primary B cells from peripheral blood	blood
15	chr19:35771000-35774600	Enhancers	Primary B cells from cord blood	blood
16	chr19:35771200-35775000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr19:35771800-35776200	Weak transcription	Fetal Kidney	kidney
18	chr19:35772000-35775600	Weak transcription	Brain Angular Gyrus	brain
19	chr19:35772000-35775600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr19:35772000-35781200	Weak transcription	Brain Substantia Nigra	brain
21	chr19:35772400-35775200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr19:35772400-35775600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr19:35773000-35774800	Flanking Active TSS	HepG2	liver
24	chr19:35773400-35774600	Active TSS	Brain Anterior Caudate	brain
25	chr19:35773400-35775600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr19:35773400-35775600	Active TSS	Brain Hippocampus Middle	brain
27	chr19:35773600-35775200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr19:35773600-35775600	Active TSS	Liver	Liver
29	chr19:35773600-35775600	Weak transcription	Lung	lung
30	chr19:35773800-35775400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr19:35774000-35775800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr19:35774000-35775800	Weak transcription	K562	blood
33	chr19:35774200-35774800	Active TSS	Right Atrium	heart
34	chr19:35774400-35774600	Enhancers	Ovary	ovary
35	chr19:35774400-35774600	Flanking Active TSS	Pancreas	Pancrea

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