Variant report

Variant	rs8103435
Chromosome Location	chr19:37066932-37066933
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:37066811-37067000	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:37063014..37065659-chr19:37066533..37068326,2	MCF-7	breast:
2	chr19:37018040..37020429-chr19:37065746..37067402,2	K562	blood:
3	chr19:37062757..37067111-chr19:37067178..37071986,8	K562	blood:
4	chr19:37065150..37067798-chr19:37072514..37074047,2	K562	blood:

Variant related genes	Relation type
ZNF529	TF binding region
ENSG00000233527	TF binding region
ENSG00000186020	Chromatin interaction
ENSG00000233527	Chromatin interaction
ENSG00000254004	Chromatin interaction
ENSG00000228629	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11881394	1.00[AMR][1000 genomes]
rs12984401	0.88[AFR][1000 genomes]
rs35659382	0.88[AFR][1000 genomes]
rs7260233	1.00[AMR][1000 genomes]
rs9989712	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3334779	chr19:37050161-37076919	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37064600-37068800	ZNF genes & repeats	A549	lung
2	chr19:37065200-37067200	Weak transcription	Aorta	Aorta
3	chr19:37065200-37068000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:37065200-37068000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr19:37065400-37067000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr19:37065400-37067000	Weak transcription	Fetal Thymus	thymus
7	chr19:37065400-37067000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr19:37065400-37067800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr19:37065400-37068000	Weak transcription	Gastric	stomach
10	chr19:37065400-37068000	Weak transcription	Left Ventricle	heart
11	chr19:37065600-37067000	Weak transcription	Placenta	Placenta
12	chr19:37065600-37067000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr19:37065600-37067200	Weak transcription	HSMM	muscle
14	chr19:37065600-37067600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr19:37065600-37067600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr19:37065600-37067800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr19:37065600-37067800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr19:37065600-37067800	Weak transcription	Primary B cells from cord blood	blood
19	chr19:37065600-37067800	Weak transcription	Colonic Mucosa	Colon
20	chr19:37065600-37067800	Weak transcription	Esophagus	oesophagus
21	chr19:37065600-37067800	Weak transcription	Ovary	ovary
22	chr19:37065600-37067800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr19:37065600-37068000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr19:37065600-37068000	Weak transcription	Brain Germinal Matrix	brain
25	chr19:37065600-37068000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr19:37065600-37068000	Weak transcription	Lung	lung
27	chr19:37065600-37068000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr19:37065600-37068000	Weak transcription	Spleen	Spleen
29	chr19:37065600-37068200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr19:37065600-37068600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr19:37065600-37069600	Weak transcription	Psoas Muscle	Psoas
32	chr19:37065600-37070200	Weak transcription	HSMMtube	muscle
33	chr19:37065600-37070200	Weak transcription	NHLF	lung
34	chr19:37065600-37081200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr19:37065600-37095400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr19:37065800-37067200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr19:37065800-37067200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr19:37065800-37067400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr19:37065800-37067800	Weak transcription	Brain Hippocampus Middle	brain
40	chr19:37065800-37067800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr19:37065800-37067800	Weak transcription	NHDF-Ad	bronchial
42	chr19:37065800-37067800	Weak transcription	NHEK	skin
43	chr19:37065800-37068000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr19:37065800-37068000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr19:37065800-37068000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr19:37065800-37068400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr19:37065800-37068400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr19:37065800-37068400	Weak transcription	Right Atrium	heart
49	chr19:37065800-37069400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr19:37065800-37070000	Weak transcription	Brain Angular Gyrus	brain

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