Variant report

Variant	rs810561
Chromosome Location	chr6:70876730-70876731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1200561	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711709	0.85[AMR][1000 genomes]
rs513631	0.85[AMR][1000 genomes]
rs531627	0.85[AMR][1000 genomes]
rs549356	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs553300	1.00[ASW][hapmap]
rs60102359	0.87[AFR][1000 genomes]
rs628028	0.85[AMR][1000 genomes]
rs692799	0.85[AMR][1000 genomes]
rs802179	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs802183	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1015807	chr6:70874416-70913489	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70856200-70899400	Weak transcription	Left Ventricle	heart
2	chr6:70875600-70879400	Strong transcription	Primary B cells from peripheral blood	blood
3	chr6:70875600-70919800	Weak transcription	GM12878-XiMat	blood
4	chr6:70875800-70876800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:70876000-70876800	Active TSS	Brain Hippocampus Middle	brain
6	chr6:70876000-70876800	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr6:70876200-70876800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:70876200-70876800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:70876200-70877000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:70876400-70876800	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:70876400-70876800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:70876400-70877000	Strong transcription	Primary B cells from cord blood	blood
13	chr6:70876400-70877000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:70876600-70876800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
15	chr6:70876600-70876800	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
16	chr6:70876600-70876800	Enhancers	Brain Anterior Caudate	brain
17	chr6:70876600-70876800	Flanking Active TSS	Brain Substantia Nigra	brain
18	chr6:70876600-70877000	Enhancers	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links