Variant report

Variant	rs8111692
Chromosome Location	chr19:35596998-35596999
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35595358..35598195-chr19:35607936..35609678,2	K562	blood:

Variant related genes	Relation type
ENSG00000089356	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1673010	1.00[EUR][1000 genomes]
rs1687995	1.00[EUR][1000 genomes]
rs1688013	1.00[EUR][1000 genomes]
rs2445825	1.00[EUR][1000 genomes]
rs502926	1.00[EUR][1000 genomes]
rs897760	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911612	chr19:35501051-35602498	Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
3	nsv911614	chr19:35570307-35648365	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
4	nsv911615	chr19:35577870-35648365	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
5	nsv911616	chr19:35577870-35669071	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
6	nsv911617	chr19:35587791-35642297	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
7	esv3355395	chr19:35594412-35598710	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35582200-35605600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:35582600-35601600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr19:35590000-35605400	Weak transcription	Right Atrium	heart
4	chr19:35596000-35597000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr19:35596000-35597800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
6	chr19:35596200-35597000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr19:35596200-35597000	ZNF genes & repeats	Esophagus	oesophagus
8	chr19:35596200-35597000	ZNF genes & repeats	Pancreas	Pancrea
9	chr19:35596200-35597200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr19:35596200-35597400	Active TSS	Brain Cingulate Gyrus	brain
11	chr19:35596400-35597000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr19:35596400-35598400	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr19:35596600-35597000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr19:35596600-35597000	ZNF genes & repeats	Spleen	Spleen
15	chr19:35596600-35597200	Active TSS	Brain Anterior Caudate	brain
16	chr19:35596800-35597000	Flanking Active TSS	Brain Substantia Nigra	brain
17	chr19:35596800-35597000	Enhancers	Lung	lung
18	chr19:35596800-35597200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr19:35596800-35597400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr19:35596800-35597400	Active TSS	Brain Angular Gyrus	brain
21	chr19:35596800-35597400	Flanking Active TSS	K562	blood
22	chr19:35596800-35597600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr19:35596800-35598200	Weak transcription	Gastric	stomach

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