Variant report

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:55692845-55693161	K562	blood:	n/a	n/a
2	POLR2A	chr19:55692306-55693566	HepG2	liver:	n/a	n/a
3	POLR2A	chr19:55691176-55693491	K562	blood:	n/a	n/a
4	POLR2A	chr19:55692936-55693225	K562	blood:	n/a	n/a

No data

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No.	Distal block	Cell Line	Cell type
1	chr19:55691908..55694093-chr19:55710384..55713231,2	K562	blood:
2	chr19:55690523..55693470-chr19:55767618..55771014,3	K562	blood:
3	chr19:55688939..55693251-chr19:55917287..55920595,8	K562	blood:
4	chr19:55690189..55693086-chr19:55769247..55770801,2	MCF-7	breast:
5	chr19:55692071..55693997-chr19:55950294..55952770,2	K562	blood:

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No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EPS8L1-2	chr19:55691523-55695370	l_1714_chr19:55688749-55693967_brain

No data

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10425369	0.84[ASN][1000 genomes]
rs11666987	0.88[ASN][1000 genomes]
rs2288525	0.90[ASN][1000 genomes]
rs2288526	0.90[ASN][1000 genomes]
rs2288527	0.90[ASN][1000 genomes]
rs3760867	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3760868	0.85[EUR][1000 genomes]
rs58646304	0.81[ASN][1000 genomes]
rs59224814	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68070528	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73066671	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9676909	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816335	chr19:55683977-55901099	Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55691200-55718200	Weak transcription	Right Atrium	heart
2	chr19:55691600-55718200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:55691800-55717600	Strong transcription	Fetal Intestine Small	intestine
4	chr19:55692000-55693200	Weak transcription	Gastric	stomach
5	chr19:55692000-55693400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr19:55692000-55696800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr19:55692000-55697000	Weak transcription	HepG2	liver
8	chr19:55692000-55697600	Weak transcription	Hela-S3	cervix
9	chr19:55692000-55707800	Weak transcription	K562	blood
10	chr19:55692200-55710000	Weak transcription	Pancreas	Pancrea
11	chr19:55692400-55693400	ZNF genes & repeats	Spleen	Spleen
12	chr19:55692600-55701200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr19:55692600-55717000	Strong transcription	Duodenum Mucosa	Duodenum
14	chr19:55692800-55694400	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr19:55693000-55693600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr19:55693000-55702800	Weak transcription	Fetal Intestine Large	intestine

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