Variant report

Variant	rs8113899
Chromosome Location	chr20:23583693-23583694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs171157	1.00[EUR][1000 genomes]
rs238645	1.00[EUR][1000 genomes]
rs238646	1.00[EUR][1000 genomes]
rs238647	1.00[EUR][1000 genomes]
rs238648	1.00[EUR][1000 genomes]
rs238649	1.00[EUR][1000 genomes]
rs238650	1.00[EUR][1000 genomes]
rs238651	1.00[EUR][1000 genomes]
rs238652	1.00[EUR][1000 genomes]
rs238653	1.00[YRI][hapmap]
rs238654	1.00[EUR][1000 genomes]
rs238655	1.00[EUR][1000 genomes]
rs238656	1.00[EUR][1000 genomes]
rs238657	1.00[EUR][1000 genomes]
rs238658	1.00[EUR][1000 genomes]
rs238660	1.00[EUR][1000 genomes]
rs238661	1.00[EUR][1000 genomes]
rs238663	1.00[EUR][1000 genomes]
rs238664	1.00[EUR][1000 genomes]
rs238665	1.00[EUR][1000 genomes]
rs238666	1.00[EUR][1000 genomes]
rs238667	1.00[EUR][1000 genomes]
rs238669	1.00[EUR][1000 genomes]
rs238670	1.00[EUR][1000 genomes]
rs238671	1.00[EUR][1000 genomes]
rs59710211	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23581600-23584600	Enhancers	Fetal Thymus	thymus
2	chr20:23582200-23584400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr20:23582400-23583800	Enhancers	Primary hematopoietic stem cells	blood
4	chr20:23582400-23584000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr20:23582600-23584000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr20:23582600-23584000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr20:23582600-23584200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr20:23582800-23584000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr20:23583400-23584200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr20:23583400-23594000	Weak transcription	Right Atrium	heart
11	chr20:23583600-23587600	Weak transcription	Spleen	Spleen

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links