Variant report

Variant	rs8118956
Chromosome Location	chr20:21917782-21917783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912814	chr20:21703615-21946928	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv585714	chr20:21863397-21918447	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	n/a
4	nsv912815	chr20:21884693-21953649	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv585715	chr20:21906780-21951847	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv585716	chr20:21906780-21967950	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv585717	chr20:21917393-21949593	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv458947	chr20:21917393-21961410	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	nsv585718	chr20:21917393-21961410	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21904800-21918200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:21916800-21920000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr20:21917000-21917800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr20:21917000-21918600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr20:21917000-21918600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:21917000-21918600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:21917000-21919600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr20:21917200-21918000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr20:21917200-21918400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr20:21917200-21919800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr20:21917400-21917800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr20:21917400-21917800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr20:21917400-21918000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr20:21917400-21918400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr20:21917400-21918800	Enhancers	H9 Cell Line	embryonic stem cell
16	chr20:21917600-21917800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr20:21917600-21918000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr20:21917600-21918000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr20:21917600-21918000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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