Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11700189	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2103761	0.82[EUR][1000 genomes]
rs2207906	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207910	0.94[ASN][1000 genomes]
rs2207911	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2423554	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2876228	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6040739	0.96[ASN][1000 genomes]
rs6074301	0.94[ASN][1000 genomes]
rs6078190	0.95[ASN][1000 genomes]
rs6078204	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6104763	0.88[ASN][1000 genomes]
rs6108906	0.83[JPT][hapmap]
rs6108958	0.81[EUR][1000 genomes]
rs6108988	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6108990	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6131222	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6134272	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6134277	0.98[ASN][1000 genomes]
rs728487	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs761475	0.80[EUR][1000 genomes]
rs973970	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11440200-11454400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11440400-11449400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr20:11447600-11449600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr20:11448200-11449400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr20:11448200-11449600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr20:11448400-11449000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr20:11448600-11449000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr20:11448600-11449600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr20:11448800-11449000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr20:11448800-11449000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr20:11448800-11451800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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