Variant report

Variant	rs8124533
Chromosome Location	chr20:15770093-15770094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11905434	1.00[MEX][hapmap]
rs11906604	1.00[MEX][hapmap]
rs16996511	0.86[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap]
rs6034342	1.00[MEX][hapmap]
rs7261088	1.00[AMR][1000 genomes]
rs7267975	0.87[AFR][1000 genomes]
rs8115170	0.85[YRI][hapmap]
rs8124934	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv458934	chr20:15738086-15772582	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv585641	chr20:15738086-15772582	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv585642	chr20:15738086-15772876	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv585643	chr20:15759361-15796051	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv912793	chr20:15760969-15807441	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1847965	chr20:15766727-15807441	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv585644	chr20:15766727-15807441	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15767200-15770800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr20:15767800-15770200	Enhancers	Brain Germinal Matrix	brain
3	chr20:15768400-15770200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr20:15768600-15770200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr20:15768800-15770200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr20:15768800-15770400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:15768800-15770400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr20:15769600-15770200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr20:15769600-15770200	Active TSS	Brain Anterior Caudate	brain
10	chr20:15769800-15770200	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr20:15769800-15770200	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr20:15769800-15770200	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr20:15769800-15770200	Enhancers	Stomach Mucosa	stomach
14	chr20:15770000-15770200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr20:15770000-15770200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr20:15770000-15770200	Active TSS	Aorta	Aorta
17	chr20:15770000-15770400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr20:15770000-15770800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr20:15770000-15775000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr20:15770000-15775200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links