Variant report
Variant | rs8125466 |
---|---|
Chromosome Location | chr20:14267824-14267825 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1555412 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1810689 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1980701 | 1.00[ASN][1000 genomes] |
rs2018662 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs2038674 | 1.00[ASN][1000 genomes] |
rs204610 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2145561 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2209018 | 1.00[ASN][1000 genomes] |
rs2327819 | 1.00[ASN][1000 genomes] |
rs3940133 | 1.00[ASN][1000 genomes] |
rs4380310 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4814289 | 1.00[ASN][1000 genomes] |
rs4814290 | 1.00[ASN][1000 genomes] |
rs59177302 | 1.00[ASN][1000 genomes] |
rs59461685 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6033888 | 1.00[ASN][1000 genomes] |
rs6033897 | 1.00[ASN][1000 genomes] |
rs6042525 | 1.00[ASN][1000 genomes] |
rs6042548 | 1.00[ASN][1000 genomes] |
rs6042552 | 1.00[ASN][1000 genomes] |
rs6042553 | 1.00[ASN][1000 genomes] |
rs6042581 | 1.00[ASN][1000 genomes] |
rs6079309 | 1.00[ASN][1000 genomes] |
rs6079331 | 1.00[ASN][1000 genomes] |
rs6079346 | 1.00[ASN][1000 genomes] |
rs6079350 | 1.00[ASN][1000 genomes] |
rs6079353 | 1.00[ASN][1000 genomes] |
rs6105221 | 1.00[ASN][1000 genomes] |
rs6110194 | 1.00[ASN][1000 genomes] |
rs7261965 | 1.00[ASN][1000 genomes] |
rs73255018 | 1.00[ASN][1000 genomes] |
rs73255080 | 1.00[ASN][1000 genomes] |
rs73264804 | 1.00[ASN][1000 genomes] |
rs73269439 | 1.00[ASN][1000 genomes] |
rs8118198 | 1.00[ASN][1000 genomes] |
rs8120693 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9753755 | 1.00[ASN][1000 genomes] |
rs979409 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs979410 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv531479 | chr20:13632491-14434432 | Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1057486 | chr20:14077828-14469129 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv532514 | chr20:14097780-14288315 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1066235 | chr20:14173771-14389050 | Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv458872 | chr20:14189779-14317390 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv470540 | chr20:14189779-14317390 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv585439 | chr20:14189779-14317390 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv1066105 | chr20:14201909-14272115 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
10 | nsv1055499 | chr20:14224873-14848061 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14263400-14268200 | Weak transcription | Muscle Satellite Cultured Cells | -- |
2 | chr20:14267400-14269000 | Enhancers | NHEK | skin |
3 | chr20:14267600-14269600 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
4 | chr20:14267600-14271000 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
5 | chr20:14267600-14271400 | Enhancers | HMEC | breast |
6 | chr20:14267800-14269200 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |