Variant report

Variant	rs8127371
Chromosome Location	chr21:15885034-15885035
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:15876554..15878638-chr21:15883430..15885143,2	K562	blood:
2	chr21:15883124..15887603-chr21:15889415..15891209,4	K562	blood:
3	chr21:15882752..15884455-chr21:15884908..15886969,2	K562	blood:
4	chr21:15882543..15885229-chr21:15891850..15893526,2	K562	blood:
5	chr21:15878918..15881751-chr21:15882365..15886915,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2822708	1.00[EUR][1000 genomes]
rs34607574	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6516844	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7282220	1.00[ASW][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73161217	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv913405	chr21:15875108-15899085	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv913406	chr21:15875108-15905580	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1796464	chr21:15884475-15900198	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv1800015	chr21:15884475-15906590	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15853200-15885800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr21:15853400-15905400	Weak transcription	HUVEC	blood vessel
3	chr21:15862600-15889400	Strong transcription	Dnd41	blood
4	chr21:15867000-15890600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr21:15873400-15891000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr21:15875800-15894000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr21:15877200-15885600	Weak transcription	Gastric	stomach
8	chr21:15878000-15890200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr21:15879200-15892600	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr21:15879400-15889400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr21:15879400-15892800	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr21:15879600-15888800	Strong transcription	Primary B cells from cord blood	blood
13	chr21:15879800-15892800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr21:15880800-15892800	Strong transcription	K562	blood
15	chr21:15881000-15885200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr21:15881600-15891000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr21:15881800-15888800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr21:15881800-15893600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr21:15882000-15885200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr21:15882000-15888800	Strong transcription	Primary B cells from peripheral blood	blood
21	chr21:15882000-15889000	Strong transcription	Primary hematopoietic stem cells	blood
22	chr21:15882200-15890200	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr21:15882800-15887600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr21:15883000-15892800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr21:15883200-15886400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr21:15883200-15892800	Weak transcription	Thymus	Thymus
27	chr21:15883200-15893200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr21:15883200-15898600	Weak transcription	Spleen	Spleen
29	chr21:15883600-15888800	Strong transcription	GM12878-XiMat	blood
30	chr21:15883600-15895200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr21:15883800-15888200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr21:15884000-15888000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr21:15884400-15885600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr21:15884400-15892800	Weak transcription	Fetal Thymus	thymus
35	chr21:15884600-15889200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr21:15885000-15886200	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links