Variant report

Variant	rs8127943
Chromosome Location	chr21:27921189-27921190
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:27887523..27889048-chr21:27919310..27921339,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11909722	0.85[EUR][1000 genomes]
rs11909726	0.85[EUR][1000 genomes]
rs12482441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1847861	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv587335	chr21:27715263-27955385	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:27886000-27923000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr21:27886200-27944200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr21:27892000-27930400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr21:27901800-27931400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr21:27903400-27932800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr21:27906000-27931200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr21:27906200-27933000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr21:27908400-27932600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr21:27908800-27930200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr21:27912600-27928800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr21:27912600-27942600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr21:27913000-27930800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr21:27914400-27921200	Weak transcription	Fetal Lung	lung
14	chr21:27914600-27944200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr21:27916400-27932400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr21:27917000-27922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr21:27917000-27922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr21:27918600-27921200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr21:27919400-27922600	Weak transcription	Fetal Stomach	stomach
20	chr21:27919600-27925600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr21:27919600-27927200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr21:27919600-27929400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr21:27920000-27921800	Weak transcription	Fetal Kidney	kidney
24	chr21:27920000-27923000	Weak transcription	Adipose Nuclei	Adipose
25	chr21:27920000-27930200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr21:27920000-27936200	Weak transcription	HUVEC	blood vessel
27	chr21:27920200-27934600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr21:27920800-27926800	Weak transcription	Right Atrium	heart
29	chr21:27921000-27931400	Weak transcription	Left Ventricle	heart

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