Variant report

Variant	rs8137262
Chromosome Location	chr22:29292135-29292136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:29290300..29292504-chr22:29426494..29429452,2	K562	blood:
2	chr22:29283926..29288290-chr22:29291343..29295207,5	K562	blood:
3	chr22:29289506..29292443-chr22:29294897..29296592,2	K562	blood:

Variant related genes	Relation type
ENSG00000177993	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1065497	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1318025	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1318026	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs132528	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs132529	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs132531	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs132533	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs132536	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs132543	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs132548	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2015500	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2064261	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs469990	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs469991	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs469992	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5752826	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5762870	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5762874	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5762877	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs5762880	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5762881	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5762882	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5997412	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6005936	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6519766	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs715531	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7287918	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8142067	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9620841	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9625619	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8137262	XBP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29281400-29294600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr22:29281400-29295200	Weak transcription	Brain Hippocampus Middle	brain
3	chr22:29281600-29292600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr22:29282200-29295000	Weak transcription	Brain Substantia Nigra	brain
5	chr22:29283400-29294200	Weak transcription	Aorta	Aorta
6	chr22:29283400-29299000	Weak transcription	Fetal Stomach	stomach
7	chr22:29284200-29292600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr22:29286000-29299000	Weak transcription	Ovary	ovary
9	chr22:29286800-29297800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr22:29288000-29301800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr22:29288400-29295000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr22:29288400-29299000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr22:29288400-29299000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr22:29288600-29292600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr22:29288600-29292600	Weak transcription	Fetal Kidney	kidney
16	chr22:29288600-29292600	Weak transcription	HSMM	muscle
17	chr22:29288600-29293600	Weak transcription	Liver	Liver
18	chr22:29288600-29294600	Weak transcription	Colon Smooth Muscle	Colon
19	chr22:29288600-29295000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr22:29288600-29296200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr22:29288600-29298600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr22:29288800-29292600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr22:29288800-29292600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr22:29290000-29296800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr22:29290400-29292200	Enhancers	Placenta	Placenta
26	chr22:29290600-29292600	Weak transcription	Primary B cells from cord blood	blood
27	chr22:29290600-29292600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr22:29290600-29292600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr22:29290800-29292600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr22:29290800-29292600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr22:29290800-29292600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr22:29290800-29292600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr22:29290800-29292600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr22:29290800-29292800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr22:29290800-29292800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr22:29290800-29292800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr22:29290800-29292800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr22:29290800-29294200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr22:29290800-29294400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr22:29290800-29295000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr22:29290800-29298400	Weak transcription	Fetal Muscle Leg	muscle
42	chr22:29290800-29298600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr22:29290800-29299000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr22:29291000-29292400	Weak transcription	NHEK	skin
45	chr22:29291000-29292600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr22:29291000-29292800	Weak transcription	Brain Anterior Caudate	brain
47	chr22:29291000-29293200	Weak transcription	Stomach Mucosa	stomach
48	chr22:29291000-29295000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr22:29291000-29295000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr22:29291000-29295200	Weak transcription	Primary monocytes fromperipheralblood	blood

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