Variant report

Variant	rs8141236
Chromosome Location	chr22:32025281-32025282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:50)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:50 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr22:32025249-32025287	GM19238	blood:	n/a	n/a
2	MTA3	chr22:32025127-32025750	GM12878	blood:	n/a	n/a
3	POLR2A	chr22:32024977-32025735	GM12878	blood:	n/a	n/a
4	POLR2A	chr22:32024622-32025644	IMR90	lung:	n/a	n/a
5	POLR2A	chr22:32024886-32027721	GM12892	blood:	n/a	n/a
6	POLR2A	chr22:32024978-32027408	GM12878	blood:	n/a	n/a
7	POLR2A	chr22:32025198-32027926	HUVEC	blood vessel:	n/a	n/a
8	POLR2A	chr22:32025030-32025439	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr22:32025106-32025688	GM12878	blood:	n/a	n/a
10	CTCF	chr22:32025225-32025702	NHEK	skin:	n/a	n/a
11	POLR2A	chr22:32025252-32027257	K562	blood:	n/a	n/a
12	POLR2A	chr22:32025093-32027734	GM18505	blood:	n/a	n/a
13	ZEB1	chr22:32025246-32025678	GM12878	blood:	n/a	n/a
14	MYC	chr22:32025245-32025396	MCF-7	breast:	n/a	n/a
15	POLR2A	chr22:32013628-32027741	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr22:32025244-32025648	MCF-7	breast:	n/a	n/a
17	POLR2A	chr22:32025007-32027403	MCF-7	breast:	n/a	n/a
18	POLR2A	chr22:32025202-32025479	GM12891	blood:	n/a	n/a
19	POLR2A	chr22:32025184-32025576	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr22:32025125-32025990	K562	blood:	n/a	n/a
21	POLR2A	chr22:32025131-32025778	GM12892	blood:	n/a	n/a
22	POLR2A	chr22:32021836-32027312	GM12878	blood:	n/a	n/a
23	BCL3	chr22:32025122-32025576	GM12878	blood:	n/a	n/a
24	POLR2A	chr22:32024915-32025729	GM12878	blood:	n/a	n/a
25	RUNX3	chr22:32025153-32025633	GM12878	blood:	n/a	n/a
26	POLR2A	chr22:32025241-32025740	MCF-7	breast:	n/a	n/a
27	POLR2A	chr22:32025230-32025994	Hela-S3	cervix:	n/a	n/a
28	CTCF	chr22:32025227-32025734	GM19239	blood:	n/a	n/a
29	POLR2A	chr22:32024647-32025987	A549	lung:	n/a	n/a
30	POLR2A	chr22:32024497-32025781	K562	blood:	n/a	n/a
31	STAT5A	chr22:32025207-32026092	GM12878	blood:	n/a	n/a
32	POU2F2	chr22:32025086-32025770	GM12891	blood:	n/a	n/a
33	POLR2A	chr22:32025145-32025394	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr22:32019390-32027366	GM12891	blood:	n/a	n/a
35	POLR2A	chr22:32025156-32025801	GM12878	blood:	n/a	n/a
36	STAT5A	chr22:32025026-32027293	GM12878	blood:	n/a	n/a
37	POLR2A	chr22:32024858-32026126	HepG2	liver:	n/a	n/a
38	POLR2A	chr22:32024951-32025781	HL-60	blood:	n/a	n/a
39	MYC	chr22:32025263-32025690	MCF-7	breast:	n/a	n/a
40	CTCF	chr22:32025191-32025354	GM12891	blood:	n/a	n/a
41	POLR2A	chr22:32019734-32028474	PBDE	blood:	n/a	n/a
42	CTCF	chr22:32025200-32025350	GM12870	blood:	n/a	n/a
43	POLR2A	chr22:32024546-32027695	GM12892	blood:	n/a	n/a
44	POLR2A	chr22:32023363-32027633	HepG2	liver:	n/a	n/a
45	POLR2A	chr22:32024882-32025827	GM12892	blood:	n/a	n/a
46	POLR2A	chr22:32025031-32025340	GM12878	blood:	n/a	n/a
47	POLR2A	chr22:32024994-32025843	GM12891	blood:	n/a	n/a
48	POLR2A	chr22:32022799-32026868	GM12891	blood:	n/a	n/a
49	CHD2	chr22:32025184-32025306	HepG2	liver:	n/a	n/a
50	CTCF	chr22:32025263-32025348	ProgFib	skin:	n/a	n/a

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:32012966-32043914..22:32347255-32351014	K562	blood:
2	22:31936958-31958600..22:32012966-32043914	GM12878	blood:
3	chr22:32024471..32026480-chr22:32056771..32058290,2	MCF-7	breast:
4	chr22:31884997..31887735-chr22:32023066..32028730,7	MCF-7	breast:
5	22:32012966-32043914..22:32513817-32522138	K562	blood:
6	22:31829733-31836635..22:32012966-32043914	GM12878	blood:
7	22:32012966-32043914..22:32665993-32670527	K562	blood:
8	chr22:31884421..31887375-chr22:32024434..32026202,2	MCF-7	breast:
9	chr22:31975899..31977942-chr22:32024771..32027892,3	MCF-7	breast:
10	chr22:31971863..31974758-chr22:32025154..32029039,5	MCF-7	breast:
11	chr22:32023093..32026034-chr22:32340368..32341945,2	K562	blood:
12	22:31930706-31935473..22:32012966-32043914	GM12878	blood:
13	22:32012966-32043914..22:32529813-32538538	K562	blood:
14	chr22:31957051..31957599-chr22:32025028..32025686,2	MCF-7	breast:
15	22:32012966-32043914..22:32846948-32860159	K562	blood:
16	chr22:32024493..32026910-chr22:32057985..32060151,2	K562	blood:
17	chr22:31978255..31985248-chr22:32021950..32028161,12	MCF-7	breast:
18	chr22:31883675..31887496-chr22:32025240..32029301,5	K562	blood:
19	chr22:32025067..32026955-chr22:32148287..32151224,2	K562	blood:
20	22:32012966-32043914..22:32360288-32405313	K562	blood:

No data

Variant related genes	Relation type
PISD	TF binding region
ENSG00000229169	Chromatin interaction
ENSG00000240647	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000238910	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000239674	Chromatin interaction
ENSG00000232707	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000234479	Chromatin interaction
ENSG00000230866	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000224050	Chromatin interaction
ENSG00000241878	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61744631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7292270	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829176	chr22:31998223-32029556	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2830290	chr22:32011225-32057964	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32010200-32025600	Genic enhancers	Placenta	Placenta
2	chr22:32014000-32025600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr22:32016400-32025400	Weak transcription	HSMM	muscle
4	chr22:32016600-32025600	Weak transcription	Small Intestine	intestine
5	chr22:32016800-32025600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr22:32017000-32025400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr22:32017600-32025600	Genic enhancers	Spleen	Spleen
8	chr22:32018000-32025400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr22:32018000-32025600	Weak transcription	Aorta	Aorta
10	chr22:32018200-32025600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr22:32018200-32025600	Weak transcription	HSMMtube	muscle
12	chr22:32019600-32026000	Genic enhancers	Esophagus	oesophagus
13	chr22:32020400-32025800	Enhancers	Fetal Thymus	thymus
14	chr22:32020800-32025600	Genic enhancers	Lung	lung
15	chr22:32020800-32026000	Genic enhancers	Gastric	stomach
16	chr22:32020800-32026000	Enhancers	Stomach Mucosa	stomach
17	chr22:32021200-32025400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr22:32021400-32025800	Enhancers	Right Atrium	heart
19	chr22:32021800-32025600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr22:32022000-32025600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr22:32022000-32025800	Enhancers	Psoas Muscle	Psoas
22	chr22:32022200-32025400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr22:32022200-32025800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr22:32022400-32025600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr22:32022400-32025600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr22:32022400-32025600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr22:32022400-32025800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr22:32022600-32025600	Genic enhancers	Muscle Satellite Cultured Cells	--
29	chr22:32022600-32026000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr22:32022800-32025400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr22:32022800-32025400	Genic enhancers	Fetal Intestine Large	intestine
32	chr22:32022800-32025600	Weak transcription	A549	lung
33	chr22:32022800-32025600	Weak transcription	NH-A	brain
34	chr22:32022800-32025800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr22:32023000-32025400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr22:32023000-32025600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr22:32023000-32025600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr22:32023000-32025800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr22:32023000-32025800	Enhancers	Primary T cells fromperipheralblood	blood
40	chr22:32023000-32026400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr22:32023200-32025600	Weak transcription	Fetal Kidney	kidney
42	chr22:32023200-32025600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr22:32023200-32025800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr22:32023400-32025600	Weak transcription	Colonic Mucosa	Colon
45	chr22:32023600-32025400	Genic enhancers	Stomach Smooth Muscle	stomach
46	chr22:32023600-32025800	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr22:32023600-32026000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr22:32023600-32026000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr22:32023800-32025400	Weak transcription	Fetal Lung	lung
50	chr22:32024000-32025400	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links