Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10774908	0.97[ASN][1000 genomes]
rs10774910	0.80[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs1093328	0.91[EUR][1000 genomes]
rs1093329	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs1093330	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2006789	0.98[ASN][1000 genomes]
rs2293046	0.91[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs2682819	0.91[EUR][1000 genomes]
rs2682820	0.92[EUR][1000 genomes]
rs2682821	0.93[EUR][1000 genomes]
rs2682822	0.93[EUR][1000 genomes]
rs2682825	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs7303718	0.97[ASN][1000 genomes]
rs816348	0.93[EUR][1000 genomes]
rs816353	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs816355	0.94[EUR][1000 genomes]
rs816356	0.93[EUR][1000 genomes]
rs816359	0.90[EUR][1000 genomes]
rs816360	0.83[EUR][1000 genomes]
rs816362	0.87[ASN][1000 genomes]
rs845820	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs904658	0.90[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs939474	0.92[EUR][1000 genomes]
rs9658498	0.90[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv510592	chr12:117618872-117684713	Bivalent/Poised TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117646400-117664400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:117651600-117660800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:117651800-117696000	Weak transcription	Brain Anterior Caudate	brain
4	chr12:117652800-117662600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:117658200-117678200	Weak transcription	Pancreas	Pancrea
6	chr12:117658600-117662000	Weak transcription	Right Atrium	heart
7	chr12:117658800-117660600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr12:117660000-117727400	Weak transcription	Psoas Muscle	Psoas
9	chr12:117660400-117661000	Strong transcription	NHEK	skin
10	chr12:117660400-117667200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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