Variant report

Variant	rs816544
Chromosome Location	chr3:156095784-156095785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1710028	0.88[YRI][hapmap]
rs2060643	0.81[ASN][1000 genomes]
rs6441063	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs816549	0.83[EUR][1000 genomes]
rs9859443	0.84[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv1812747	chr3:156092164-156096606	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1809143	chr3:156092164-156098920	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv592115	chr3:156092548-156097836	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1806015	chr3:156095513-156114898	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156088600-156096000	Weak transcription	Placenta	Placenta
2	chr3:156090800-156100600	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:156092400-156101600	Weak transcription	Aorta	Aorta
4	chr3:156094200-156105000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:156094600-156096000	Enhancers	Fetal Heart	heart
6	chr3:156094800-156097600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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