The 2.0 version of rSNPBase

Variant report

Variant rs817450
Chromosome Location chr1:85655317-85655318
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85615800-85665800 Weak transcription Esophagus oesophagus
2 chr1:85626800-85655600 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr1:85627200-85657400 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:85627400-85655800 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr1:85627400-85663000 Weak transcription NHEK skin
6 chr1:85627800-85655800 Weak transcription NHDF-Ad bronchial
7 chr1:85627800-85664400 Weak transcription Osteobl bone
8 chr1:85639000-85665400 Weak transcription Placenta Placenta
9 chr1:85642000-85655800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr1:85643200-85658800 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr1:85644200-85664400 Weak transcription Muscle Satellite Cultured Cells --
12 chr1:85645600-85655800 Weak transcription H9 Cell Line embryonic stem cell
13 chr1:85645800-85659400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr1:85645800-85663800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:85646000-85655800 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr1:85646000-85659000 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr1:85646000-85661400 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr1:85646000-85664800 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr1:85646200-85663600 Weak transcription Primary T helper cells PMA-I stimulated --
20 chr1:85646600-85665200 Weak transcription Primary T killer memory cells from peripheral blood blood
21 chr1:85646800-85663800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
22 chr1:85647000-85658200 Weak transcription Fetal Muscle Trunk muscle
23 chr1:85647000-85661400 Weak transcription Right Ventricle heart
24 chr1:85647200-85664400 Weak transcription Fetal Kidney kidney
25 chr1:85648400-85665200 Weak transcription Ovary ovary
26 chr1:85648400-85665200 Weak transcription HSMM muscle
27 chr1:85648600-85661200 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr1:85648800-85655600 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr1:85648800-85655600 Weak transcription K562 blood
30 chr1:85648800-85664600 Weak transcription NH-A brain
31 chr1:85649200-85665800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:85653600-85656200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr1:85653600-85656400 Strong transcription HUES64 Cell Line embryonic stem cell
34 chr1:85653600-85664200 Weak transcription HMEC breast
35 chr1:85654000-85655400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr1:85654000-85655400 Enhancers Rectal Smooth Muscle rectum
37 chr1:85654000-85655400 Enhancers GM12878-XiMat blood
38 chr1:85654000-85656200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr1:85654000-85656200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:85654000-85656200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr1:85654000-85656400 Strong transcription Breast Myoepithelial Primary Cells Breast
42 chr1:85654000-85656400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr1:85654000-85656400 Strong transcription HSMMtube muscle
44 chr1:85654000-85664800 Weak transcription HUVEC blood vessel
45 chr1:85654000-85665600 Weak transcription Brain Anterior Caudate brain
46 chr1:85654200-85656000 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
47 chr1:85654200-85656200 Strong transcription HepG2 liver
48 chr1:85654200-85656400 Strong transcription HUES6 Cell Line embryonic stem cell
49 chr1:85654200-85656400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr1:85654200-85656400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015