Variant report

Variant	rs8177339
Chromosome Location	chr3:133499700-133499701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs41296610	1.00[ASN][1000 genomes]
rs55633281	1.00[ASN][1000 genomes]
rs57447001	1.00[ASN][1000 genomes]
rs60695717	1.00[ASN][1000 genomes]
rs8177337	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv4018	chr3:133485867-133530668	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133496200-133500200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:133497400-133502600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:133498200-133500400	Weak transcription	Liver	Liver
4	chr3:133498400-133503400	Weak transcription	Adipose Nuclei	Adipose
5	chr3:133498600-133505800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:133498600-133510400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:133498800-133508000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:133499000-133505200	Weak transcription	Brain Anterior Caudate	brain
9	chr3:133499000-133510800	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:133499200-133503400	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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