Variant report

Variant	rs8177610
Chromosome Location	chr10:6023841-6023842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:43)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:43 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr10:6023359-6024011	K562	blood:	n/a	n/a
2	MAZ	chr10:6023731-6023932	K562	blood:	n/a	n/a
3	ZNF384	chr10:6023457-6024183	K562	blood:	n/a	n/a
4	UBTF	chr10:6023708-6023880	K562	blood:	n/a	n/a
5	CEBPD	chr10:6023295-6024020	K562	blood:	n/a	n/a
6	ZBTB7A	chr10:6023599-6023878	K562	blood:	n/a	n/a
7	GATA1	chr10:6022840-6024153	K562	blood:	n/a	n/a
8	RCOR1	chr10:6023555-6023908	K562	blood:	n/a	n/a
9	CEBPB	chr10:6023538-6023881	K562	blood:	n/a	n/a
10	CEBPD	chr10:6023419-6023918	K562	blood:	n/a	n/a
11	CEBPB	chr10:6023495-6023875	K562	blood:	n/a	n/a
12	TBL1XR1	chr10:6023671-6023902	K562	blood:	n/a	n/a
13	TRIM28	chr10:6023479-6024029	K562	blood:	n/a	n/a
14	NR2F2	chr10:6023495-6024097	K562	blood:	n/a	n/a
15	ZNF274	chr10:6023414-6023963	K562	blood:	n/a	n/a
16	PML	chr10:6023527-6024001	K562	blood:	n/a	n/a
17	REST	chr10:6023654-6023889	K562	blood:	n/a	n/a
18	NR2F2	chr10:6023581-6023938	K562	blood:	n/a	n/a
19	GATA1	chr10:6023223-6023985	PBDE	blood:	n/a	n/a
20	HMGN3	chr10:6023599-6023846	K562	blood:	n/a	n/a
21	RCOR1	chr10:6023179-6023954	K562	blood:	n/a	n/a
22	CTCF	chr10:6023614-6023844	K562	blood:	n/a	chr10:6023724-6023731
23	STAT5A	chr10:6023379-6023988	K562	blood:	n/a	n/a
24	BHLHE40	chr10:6023473-6024037	K562	blood:	n/a	n/a
25	TEAD4	chr10:6023376-6023971	K562	blood:	n/a	n/a
26	POLR2A	chr10:6023544-6023951	K562	blood:	n/a	n/a
27	MYC	chr10:6023516-6023877	K562	blood:	n/a	n/a
28	MAFK	chr10:6023487-6023869	K562	blood:	n/a	n/a
29	GATA2	chr10:6023470-6023936	K562	blood:	n/a	n/a
30	MAX	chr10:6023331-6024077	K562	blood:	n/a	chr10:6023936-6023947
31	EP300	chr10:6023514-6023926	K562	blood:	n/a	n/a
32	TAL1	chr10:6023342-6023974	K562	blood:	n/a	chr10:6023764-6023773 chr10:6023761-6023776 chr10:6023769-6023784 chr10:6023769-6023784 chr10:6023729-6023747 chr10:6023769-6023784
33	TEAD4	chr10:6023312-6024012	K562	blood:	n/a	n/a
34	ZMIZ1	chr10:6023593-6023844	K562	blood:	n/a	n/a
35	CBX3	chr10:6023607-6023975	K562	blood:	n/a	n/a
36	CCNT2	chr10:6023485-6023854	K562	blood:	n/a	n/a
37	MYC	chr10:6023330-6023976	K562	blood:	n/a	chr10:6023936-6023947
38	POLR2A	chr10:6023595-6023932	K562	blood:	n/a	n/a
39	MAFF	chr10:6023604-6023857	K562	blood:	n/a	n/a
40	GATA2	chr10:6023579-6023919	K562	blood:	n/a	n/a
41	STAT5A	chr10:6023551-6023926	K562	blood:	n/a	n/a
42	GATA2	chr10:6023389-6023985	K562	blood:	n/a	n/a
43	JUND	chr10:6023434-6023883	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6018280..6021234-chr10:6022960..6024557,2	MCF-7	breast:
2	chr10:6023454..6025587-chr10:6029284..6031828,3	K562	blood:
3	chr10:6018052..6020391-chr10:6022296..6024852,3	MCF-7	breast:
4	chr10:6023723..6026248-chr10:6032450..6034311,2	K562	blood:
5	chr10:6020440..6022335-chr10:6023498..6026826,3	MCF-7	breast:

No data

Variant related genes	Relation type
IL15RA	TF binding region
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11257023	1.00[AMR][1000 genomes]
rs7086498	1.00[AMR][1000 genomes]
rs8177627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8177663	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6020400-6025800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:6020400-6029800	Weak transcription	Ovary	ovary
3	chr10:6020800-6025600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:6021000-6027800	Weak transcription	Adipose Nuclei	Adipose
5	chr10:6023200-6024000	Flanking Active TSS	K562	blood
6	chr10:6023800-6026200	Weak transcription	Pancreas	Pancrea

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