Variant report

Variant	rs8177664
Chromosome Location	chr10:6013305-6013306
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6007113..6010005-chr10:6010444..6013465,3	K562	blood:
2	chr10:5853245..5855469-chr10:6013214..6014749,2	K562	blood:
3	chr10:6012910..6014707-chr10:6021829..6023507,2	MCF-7	breast:
4	chr10:6007109..6010218-chr10:6012189..6014551,3	MCF-7	breast:
5	chr10:6013212..6015263-chr10:6018086..6020724,4	MCF-7	breast:
6	chr10:6012288..6016464-chr10:6016504..6020511,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000057608	Chromatin interaction
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3181148	0.94[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs41294579	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8177647	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8177767	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5980800-6017800	Weak transcription	Thymus	Thymus
2	chr10:5986200-6018600	Weak transcription	Aorta	Aorta
3	chr10:5987600-6018000	Weak transcription	Psoas Muscle	Psoas
4	chr10:5987800-6017800	Weak transcription	Fetal Thymus	thymus
5	chr10:5999400-6017600	Weak transcription	Primary B cells from cord blood	blood
6	chr10:6001000-6017400	Weak transcription	NHLF	lung
7	chr10:6002400-6017800	Weak transcription	Placenta	Placenta
8	chr10:6004200-6013400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:6005400-6013400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:6005400-6017400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:6005400-6017800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr10:6005400-6018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:6005600-6013400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:6005800-6013400	Weak transcription	Esophagus	oesophagus
15	chr10:6005800-6018200	Weak transcription	Ovary	ovary
16	chr10:6007600-6018200	Weak transcription	Right Ventricle	heart
17	chr10:6008400-6013400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:6008400-6017800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:6010400-6013400	Enhancers	Liver	Liver
20	chr10:6010800-6017800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:6011000-6013400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:6011000-6013400	Weak transcription	Spleen	Spleen
23	chr10:6011600-6013400	Weak transcription	Right Atrium	heart
24	chr10:6012000-6014000	Enhancers	Fetal Intestine Large	intestine
25	chr10:6012000-6014200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:6012200-6014000	Enhancers	Fetal Intestine Small	intestine
27	chr10:6012200-6014200	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr10:6012400-6015000	Enhancers	Hela-S3	cervix
29	chr10:6012400-6015200	Enhancers	Small Intestine	intestine
30	chr10:6012600-6014200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr10:6012800-6013400	Enhancers	Colonic Mucosa	Colon
32	chr10:6012800-6013800	Enhancers	Primary T cells fromperipheralblood	blood
33	chr10:6012800-6013800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:6012800-6013800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:6012800-6014000	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr10:6012800-6014000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:6012800-6014000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:6012800-6014000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
39	chr10:6012800-6014200	Enhancers	Primary B cells from peripheral blood	blood
40	chr10:6012800-6014200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:6012800-6014200	Enhancers	Gastric	stomach
42	chr10:6012800-6014200	Enhancers	Lung	lung
43	chr10:6012800-6014200	Enhancers	Pancreas	Pancrea
44	chr10:6013000-6013400	Weak transcription	Left Ventricle	heart
45	chr10:6013000-6013400	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr10:6013000-6013600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:6013000-6013600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:6013000-6013600	Enhancers	HMEC	breast
49	chr10:6013000-6014000	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr10:6013000-6014000	Flanking Active TSS	Duodenum Mucosa	Duodenum

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