Variant report

Variant	rs8177777
Chromosome Location	chr10:6010864-6010865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:51)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:51 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:6010112-6011247	H1-neurons	neurons:	n/a	chr10:6010263-6010281
2	EP300	chr10:6010799-6011147	HepG2	liver:	n/a	n/a
3	E2F6	chr10:6010535-6011119	H1-hESC	embryonic stem cell:	n/a	chr10:6010856-6010867
4	FOSL2	chr10:6010704-6011155	HepG2	liver:	n/a	n/a
5	FOXA2	chr10:6010800-6011156	HepG2	liver:	n/a	n/a
6	MAX	chr10:6010550-6011012	HepG2	liver:	n/a	n/a
7	E2F6	chr10:6010474-6011100	K562	blood:	n/a	chr10:6010856-6010867
8	EP300	chr10:6010800-6011144	HepG2	liver:	n/a	n/a
9	MAX	chr10:6010568-6011187	HepG2	liver:	n/a	n/a
10	E2F6	chr10:6010654-6010982	K562	blood:	n/a	chr10:6010856-6010867
11	FOSL2	chr10:6010692-6011175	HepG2	liver:	n/a	n/a
12	MXI1	chr10:6010720-6011142	HepG2	liver:	n/a	n/a
13	NFIC	chr10:6010712-6011200	HepG2	liver:	n/a	n/a
14	CEBPB	chr10:6010677-6011139	HepG2	liver:	n/a	n/a
15	JUND	chr10:6010804-6011209	HepG2	liver:	n/a	chr10:6011005-6011016
16	ARID3A	chr10:6010835-6011436	HepG2	liver:	n/a	n/a
17	RFX5	chr10:6010673-6011094	HepG2	liver:	n/a	n/a
18	JUND	chr10:6010780-6011170	HepG2	liver:	n/a	chr10:6011005-6011016
19	MYBL2	chr10:6010728-6011250	HepG2	liver:	n/a	n/a
20	JUN	chr10:6010838-6011198	HepG2	liver:	n/a	n/a
21	FOXA1	chr10:6010745-6011168	HepG2	liver:	n/a	n/a
22	HDAC2	chr10:6010830-6011144	HepG2	liver:	n/a	n/a
23	MYBL2	chr10:6010620-6011169	HepG2	liver:	n/a	n/a
24	MAX	chr10:6010631-6011070	K562	blood:	n/a	n/a
25	ELF1	chr10:6010784-6011013	HepG2	liver:	n/a	n/a
26	EP300	chr10:6010739-6011152	HepG2	liver:	n/a	n/a
27	MAFK	chr10:6010856-6011176	HepG2	liver:	n/a	n/a
28	MAX	chr10:6010668-6011011	H1-hESC	embryonic stem cell:	n/a	n/a
29	FOXA1	chr10:6010776-6011200	HepG2	liver:	n/a	n/a
30	HDAC2	chr10:6010741-6011183	HepG2	liver:	n/a	n/a
31	REST	chr10:6010818-6011144	HepG2	liver:	n/a	n/a
32	MAX	chr10:6010423-6011202	HepG2	liver:	n/a	n/a
33	BHLHE40	chr10:6010834-6011189	HepG2	liver:	n/a	n/a
34	E2F6	chr10:6010682-6011009	K562	blood:	n/a	chr10:6010856-6010867
35	MAX	chr10:6010595-6011004	ECC-1	luminal epithelium:	n/a	n/a
36	MBD4	chr10:6010714-6011182	HepG2	liver:	n/a	n/a
37	ZBTB33	chr10:6010787-6011126	HepG2	liver:	n/a	n/a
38	NFIC	chr10:6010833-6011170	HepG2	liver:	n/a	n/a
39	JUND	chr10:6010825-6011164	HepG2	liver:	n/a	chr10:6011005-6011016
40	CUX1	chr10:6010830-6011190	K562	blood:	n/a	n/a
41	FOXA2	chr10:6010571-6011270	HepG2	liver:	n/a	n/a
42	FOXA1	chr10:6010760-6011172	HepG2	liver:	n/a	n/a
43	RCOR1	chr10:6010391-6011152	HepG2	liver:	n/a	n/a
44	FOXA1	chr10:6010789-6011166	HepG2	liver:	n/a	n/a
45	ELF1	chr10:6010713-6011074	HepG2	liver:	n/a	n/a
46	E2F6	chr10:6010681-6011047	H1-hESC	embryonic stem cell:	n/a	chr10:6010856-6010867
47	MAFK	chr10:6010852-6011182	HepG2	liver:	n/a	n/a
48	SP1	chr10:6010763-6011147	HepG2	liver:	n/a	n/a
49	MAFF	chr10:6010834-6011195	HepG2	liver:	n/a	n/a
50	NR2F2	chr10:6010730-6011216	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6010165..6011838-chr10:6017031..6019574,2	MCF-7	breast:
2	chr10:6007113..6010005-chr10:6010444..6013465,3	K562	blood:
3	chr10:6003571..6011080-chr10:6014794..6021269,11	K562	blood:
4	chr10:6004028..6007611-chr10:6009134..6011169,3	MCF-7	breast:
5	chr10:6002748..6006504-chr10:6008891..6012055,4	K562	blood:

No data

Variant related genes	Relation type
IL15RA	TF binding region
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs41294703	1.00[AFR][1000 genomes]
rs41294917	1.00[AFR][1000 genomes]
rs61834460	1.00[AFR][1000 genomes]
rs8177757	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5969600-6012000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:5971400-6013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:5980000-6013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:5980800-6017800	Weak transcription	Thymus	Thymus
5	chr10:5986200-6018600	Weak transcription	Aorta	Aorta
6	chr10:5987600-6018000	Weak transcription	Psoas Muscle	Psoas
7	chr10:5987800-6017800	Weak transcription	Fetal Thymus	thymus
8	chr10:5988600-6011800	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:5993600-6013200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:5994000-6011000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr10:5994000-6012800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:5994200-6012200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:5994200-6012800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:5995400-6012400	Weak transcription	Small Intestine	intestine
15	chr10:5999400-6017600	Weak transcription	Primary B cells from cord blood	blood
16	chr10:5999800-6011000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:6001000-6017400	Weak transcription	NHLF	lung
18	chr10:6002400-6017800	Weak transcription	Placenta	Placenta
19	chr10:6002800-6012400	Weak transcription	Hela-S3	cervix
20	chr10:6002800-6013000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:6004200-6013400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:6005400-6012000	Weak transcription	Fetal Intestine Large	intestine
23	chr10:6005400-6013400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:6005400-6017400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr10:6005400-6017800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:6005400-6018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:6005600-6013400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:6005800-6012000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:6005800-6012800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr10:6005800-6013000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr10:6005800-6013400	Weak transcription	Esophagus	oesophagus
32	chr10:6005800-6018200	Weak transcription	Ovary	ovary
33	chr10:6007400-6012800	Weak transcription	Colonic Mucosa	Colon
34	chr10:6007400-6013000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:6007400-6013200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:6007600-6012200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr10:6007600-6012800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:6007600-6018200	Weak transcription	Right Ventricle	heart
39	chr10:6008000-6013000	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:6008400-6012000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr10:6008400-6013400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:6008400-6017800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr10:6008600-6012200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:6008600-6013000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr10:6008800-6013000	Weak transcription	Adipose Nuclei	Adipose
46	chr10:6009200-6011000	Strong transcription	Duodenum Mucosa	Duodenum
47	chr10:6009400-6011000	Genic enhancers	Pancreas	Pancrea
48	chr10:6010000-6011000	Enhancers	HepG2	liver
49	chr10:6010200-6011000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:6010400-6011000	Strong transcription	Fetal Intestine Small	intestine

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