Variant report

Variant	rs8177817
Chromosome Location	chr9:116151223-116151224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116149305..116153675-chr9:116170904..116174330,4	MCF-7	breast:
2	chr9:116150738..116153082-chr9:116153236..116155969,3	MCF-7	breast:
3	chr9:116149635..116151577-chr9:116153234..116155559,2	MCF-7	breast:
4	chr9:116137615..116140170-chr9:116150544..116152687,3	MCF-7	breast:
5	chr9:116149427..116152233-chr9:116182929..116184530,2	K562	blood:
6	chr9:116148030..116156107-chr9:116161914..116166950,9	MCF-7	breast:
7	chr9:116149664..116152667-chr9:116172993..116176331,3	K562	blood:

Variant related genes	Relation type
ENSG00000148229	Chromatin interaction
ENSG00000119431	Chromatin interaction
ENSG00000148218	Chromatin interaction
ENSG00000157653	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv825053	chr9:116150987-116158992	Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116127800-116160400	Weak transcription	Fetal Heart	heart
2	chr9:116139800-116152600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:116139800-116159000	Weak transcription	HSMM	muscle
4	chr9:116139800-116159600	Weak transcription	NH-A	brain
5	chr9:116139800-116160400	Weak transcription	NHDF-Ad	bronchial
6	chr9:116139800-116161400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr9:116139800-116161400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:116139800-116162000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr9:116140000-116152400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:116140000-116160200	Weak transcription	HMEC	breast
11	chr9:116140000-116162000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:116140200-116152600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:116141400-116152800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:116143400-116160200	Weak transcription	Small Intestine	intestine
15	chr9:116144600-116162600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr9:116144800-116153200	Weak transcription	NHEK	skin
17	chr9:116144800-116158600	Weak transcription	K562	blood
18	chr9:116146600-116162800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr9:116147800-116159800	Strong transcription	Fetal Stomach	stomach
20	chr9:116148000-116155800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr9:116148000-116155800	Strong transcription	Brain Anterior Caudate	brain
22	chr9:116148000-116155800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:116148000-116156000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:116148000-116156200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:116148000-116156400	Strong transcription	Primary T cells from cord blood	blood
26	chr9:116148000-116156800	Strong transcription	Fetal Muscle Leg	muscle
27	chr9:116148000-116158000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:116148000-116159000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr9:116148000-116159400	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr9:116148200-116156400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:116148200-116158000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:116148400-116153400	Genic enhancers	Fetal Intestine Large	intestine
33	chr9:116148400-116155000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:116148400-116156000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr9:116148600-116154800	Strong transcription	Fetal Brain Female	brain
36	chr9:116148600-116154800	Strong transcription	Left Ventricle	heart
37	chr9:116148600-116155600	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:116148600-116156200	Strong transcription	Brain Hippocampus Middle	brain
39	chr9:116148600-116156800	Strong transcription	Brain Germinal Matrix	brain
40	chr9:116148600-116159200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:116148800-116155800	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr9:116148800-116155800	Strong transcription	Placenta Amnion	Placenta Amnion
43	chr9:116148800-116156000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr9:116148800-116156200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr9:116148800-116156200	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr9:116149000-116153000	Strong transcription	GM12878-XiMat	blood
47	chr9:116149000-116154600	Strong transcription	Spleen	Spleen
48	chr9:116149000-116155200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:116149000-116155600	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr9:116149000-116155800	Strong transcription	Primary T helper cells fromperipheralblood	blood

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