Variant report

Variant	rs817849
Chromosome Location	chr9:110103414-110103415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110094116..110096830-chr9:110102981..110104724,2	K562	blood:
2	chr9:110090073..110092495-chr9:110102764..110105284,2	MCF-7	breast:
3	chr9:110102299..110105687-chr9:110106035..110108571,3	MCF-7	breast:
4	chr9:110079426..110081266-chr9:110101654..110103447,2	MCF-7	breast:
5	chr9:110099927..110101842-chr9:110102042..110103767,2	MCF-7	breast:
6	chr9:110001502..110002534-chr9:110103139..110104123,8	MCF-7	breast:
7	chr9:110094116..110096830-chr9:110102084..110104724,3	K562	blood:
8	chr9:109991080..109992834-chr9:110102053..110103611,2	MCF-7	breast:
9	chr9:110001311..110002427-chr9:110103159..110104135,5	MCF-7	breast:

No data

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10113916	0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10119641	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs10481632	0.88[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10521083	0.91[CHD][hapmap]
rs10739236	0.97[CHD][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs10759222	0.88[CHD][hapmap]
rs10759225	0.83[CHD][hapmap]
rs10816477	0.88[CHB][hapmap];0.88[CHD][hapmap]
rs10816485	0.88[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10816490	0.88[ASN][1000 genomes]
rs10816491	0.88[ASN][1000 genomes]
rs10978767	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs10978775	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs10978791	0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12345455	0.88[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap]
rs1323809	0.83[CHD][hapmap]
rs1805329	0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1805332	0.91[CHD][hapmap]
rs1805334	0.91[CHD][hapmap]
rs1805335	0.85[CHD][hapmap]
rs2147072	0.88[CHD][hapmap]
rs2417784	0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs28534368	0.84[ASN][1000 genomes]
rs4278207	0.91[CHD][hapmap]
rs61701375	0.84[ASN][1000 genomes]
rs698475	0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7035611	0.91[CHD][hapmap]
rs7040217	0.84[ASN][1000 genomes]
rs7041137	0.88[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7041497	0.91[CHD][hapmap]
rs7867544	0.83[CHB][hapmap];0.94[CHD][hapmap]
rs817836	0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs817838	0.88[ASN][1000 genomes]
rs817839	0.88[ASN][1000 genomes]
rs817840	0.88[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs817841	0.88[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs817843	0.88[ASN][1000 genomes]
rs817844	0.88[ASN][1000 genomes]
rs817845	0.88[ASN][1000 genomes]
rs817847	0.88[ASN][1000 genomes]
rs817851	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817853	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs817856	0.84[EUR][1000 genomes]
rs817858	0.84[EUR][1000 genomes]
rs817859	0.84[EUR][1000 genomes]
rs817861	0.81[EUR][1000 genomes]
rs817862	0.81[EUR][1000 genomes]
rs942291	0.88[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap]
rs942292	0.88[CHD][hapmap]
rs9632893	0.83[CHB][hapmap]
rs9969728	0.88[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1042965	chr9:110100745-110126661	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110070200-110104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:110095000-110104600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:110096800-110107200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:110097000-110103600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:110097000-110103600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:110097000-110104600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:110097000-110107200	Weak transcription	Fetal Kidney	kidney
8	chr9:110097000-110107600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:110097200-110103600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr9:110097200-110113800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:110097800-110103600	Weak transcription	Hela-S3	cervix
12	chr9:110099400-110107600	Weak transcription	Adipose Nuclei	Adipose
13	chr9:110100000-110106200	Weak transcription	Psoas Muscle	Psoas
14	chr9:110100600-110103600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:110100600-110112800	Weak transcription	Esophagus	oesophagus
16	chr9:110101000-110106200	Strong transcription	NHLF	lung
17	chr9:110101000-110107800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr9:110101200-110103800	Strong transcription	HSMM	muscle
19	chr9:110101200-110104200	Strong transcription	HSMMtube	muscle
20	chr9:110101400-110103600	Weak transcription	Brain Hippocampus Middle	brain
21	chr9:110101400-110103600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:110101400-110105000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr9:110101400-110105800	Weak transcription	Fetal Stomach	stomach
24	chr9:110101400-110107200	Weak transcription	Dnd41	blood
25	chr9:110101400-110107800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr9:110101400-110111200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr9:110101600-110104600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr9:110101600-110107000	Weak transcription	Thymus	Thymus
29	chr9:110101600-110107400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:110101600-110107400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:110101600-110107600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:110101600-110108600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:110101600-110111200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:110101800-110103600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:110101800-110103600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr9:110101800-110103600	Weak transcription	Fetal Intestine Large	intestine
37	chr9:110101800-110104800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr9:110101800-110104800	Weak transcription	NH-A	brain
39	chr9:110101800-110105000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:110101800-110107200	Weak transcription	Primary T cells from cord blood	blood
41	chr9:110101800-110107200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr9:110101800-110107600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:110102000-110103600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr9:110102000-110107600	Weak transcription	Osteobl	bone
45	chr9:110102000-110107800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:110102600-110103600	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr9:110102600-110103600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:110102600-110103800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:110102600-110103800	Enhancers	Liver	Liver
50	chr9:110102800-110103600	Enhancers	HUES6 Cell Line	embryonic stem cell

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