Variant report

Variant	rs8179695
Chromosome Location	chr2:31283345-31283346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11124240	0.80[CEU][hapmap]
rs1862982	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2161834	0.84[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31278200-31283600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr2:31278200-31293000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:31278200-31310800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:31278800-31306800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:31281000-31290000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:31282200-31284200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:31282600-31284600	Enhancers	Fetal Kidney	kidney
8	chr2:31282800-31284800	Enhancers	Fetal Intestine Large	intestine
9	chr2:31283000-31283800	Enhancers	Duodenum Mucosa	Duodenum
10	chr2:31283200-31284600	Enhancers	Fetal Intestine Small	intestine
11	chr2:31283200-31292200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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