Variant report

Variant	rs8180902
Chromosome Location	chr8:3266789-3266790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12543952	0.98[ASN][1000 genomes]
rs12544056	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12544481	0.97[ASN][1000 genomes]
rs12546181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12547951	0.92[ASN][1000 genomes]
rs12678039	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1553181	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1553182	1.00[JPT][hapmap]
rs1553184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1553185	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2166708	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35484775	0.86[ASN][1000 genomes]
rs35531297	0.93[ASN][1000 genomes]
rs58484378	0.84[ASN][1000 genomes]
rs7018165	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7018325	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs73657861	0.92[ASN][1000 genomes]
rs73657864	0.92[ASN][1000 genomes]
rs73657865	0.90[ASN][1000 genomes]
rs73657866	0.89[ASN][1000 genomes]
rs73657867	0.89[ASN][1000 genomes]
rs73657869	0.84[ASN][1000 genomes]
rs73657872	0.84[ASN][1000 genomes]
rs73657876	0.84[ASN][1000 genomes]
rs73657877	0.84[ASN][1000 genomes]
rs73657878	0.84[ASN][1000 genomes]
rs9644339	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033589	chr8:2498609-3305100	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1018407	chr8:2724294-3305100	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv915568	chr8:2725834-3291312	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1025408	chr8:2733604-3302447	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1025209	chr8:3067655-3754882	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1026643	chr8:3077210-3277827	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1026998	chr8:3102679-3593264	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1034076	chr8:3168033-3989947	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv539351	chr8:3168033-3989947	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1017164	chr8:3174168-4026811	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv539352	chr8:3174168-4026811	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1018218	chr8:3180287-4089011	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:3255200-3269800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:3255400-3269800	Weak transcription	Brain Anterior Caudate	brain
3	chr8:3255600-3269800	Weak transcription	Brain Hippocampus Middle	brain
4	chr8:3255600-3269800	Weak transcription	Brain Substantia Nigra	brain
5	chr8:3257000-3270000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:3265200-3269800	Weak transcription	Brain Angular Gyrus	brain
7	chr8:3266000-3269200	Weak transcription	Fetal Brain Male	brain
8	chr8:3266600-3267000	Enhancers	Fetal Heart	heart
9	chr8:3266600-3267000	Active TSS	Fetal Kidney	kidney

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