Variant report

Variant	rs8180916
Chromosome Location	chr8:127855241-127855242
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:127854860-127856058	IMR90	lung:	n/a	chr8:127855891-127855902 chr8:127855892-127855903 chr8:127855891-127855904

Variant related genes	Relation type
PCAT1	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7825034	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127846600-127858200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:127846800-127857200	Weak transcription	Fetal Kidney	kidney
3	chr8:127847600-127857200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:127847600-127860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:127849600-127856600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:127850600-127856000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr8:127852000-127855800	Weak transcription	Adipose Nuclei	Adipose
8	chr8:127853600-127857800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:127854000-127855400	Weak transcription	Fetal Lung	lung
10	chr8:127854000-127855600	Enhancers	Esophagus	oesophagus
11	chr8:127854000-127855600	Enhancers	Fetal Muscle Leg	muscle
12	chr8:127854200-127855400	Weak transcription	Lung	lung
13	chr8:127854400-127856600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:127854400-127858200	Enhancers	Placenta	Placenta
15	chr8:127854400-127858600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:127854600-127856200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:127854800-127855400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:127854800-127855800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr8:127854800-127856600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:127855000-127855800	Weak transcription	NHEK	skin
21	chr8:127855000-127856400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:127855000-127856600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:127855000-127856800	Weak transcription	HMEC	breast
24	chr8:127855000-127858200	Weak transcription	Stomach Mucosa	stomach
25	chr8:127855200-127855600	Enhancers	HSMMtube	muscle

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