Variant report

Variant	rs8182062
Chromosome Location	chr15:51254502-51254503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51248351..51249869-chr15:51253170..51254880,2	MCF-7	breast:

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs1009882	0.84[CHB][hapmap]
rs11070822	0.88[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs11070831	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs11070832	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs11070834	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs1124769	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs1135397	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1147129	0.82[YRI][hapmap]
rs1147131	0.82[YRI][hapmap]
rs1147132	0.89[ASN][1000 genomes]
rs1147134	0.89[ASN][1000 genomes]
rs1147137	0.83[ASN][1000 genomes]
rs1147138	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1147140	0.85[ASN][1000 genomes]
rs11636886	0.94[JPT][hapmap]
rs12438343	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs12440167	0.94[JPT][hapmap]
rs12440387	0.93[ASN][1000 genomes]
rs12440745	0.91[ASN][1000 genomes]
rs12442459	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs12591434	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs12591500	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs12591735	0.81[JPT][hapmap]
rs12593342	0.88[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs12593764	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs12593765	0.92[ASN][1000 genomes]
rs12593778	0.87[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs12595526	0.91[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs12595551	0.86[CHB][hapmap]
rs12595600	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs1276855	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1276856	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1290084	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12902649	0.80[ASN][1000 genomes]
rs12904435	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs12909760	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12909839	0.88[ASN][1000 genomes]
rs12911207	0.90[JPT][hapmap]
rs12912106	0.85[JPT][hapmap]
rs12916845	0.87[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs17646461	0.88[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs17646917	0.88[ASN][1000 genomes]
rs17647040	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs17702978	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17703435	0.83[ASN][1000 genomes]
rs1871460	0.91[ASN][1000 genomes]
rs1876784	0.88[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs1903588	0.81[ASN][1000 genomes]
rs1903589	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1904430	0.91[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs1955	0.91[ASN][1000 genomes]
rs2127368	0.86[YRI][hapmap]
rs2289304	0.88[ASN][1000 genomes]
rs2291107	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2306331	0.82[YRI][hapmap]
rs2414081	0.83[YRI][hapmap]
rs2614765	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2614766	0.81[ASN][1000 genomes]
rs2614768	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2614774	0.88[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2614776	0.86[YRI][hapmap]
rs2614779	0.86[YRI][hapmap]
rs2614780	0.82[YRI][hapmap]
rs2614787	0.91[ASN][1000 genomes]
rs2614788	0.91[ASN][1000 genomes]
rs2614792	0.82[YRI][hapmap]
rs2614793	0.91[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2619689	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2619690	0.89[ASN][1000 genomes]
rs2619692	0.89[ASN][1000 genomes]
rs2619695	0.83[ASN][1000 genomes]
rs2619696	0.83[ASN][1000 genomes]
rs2663528	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2663531	0.91[ASN][1000 genomes]
rs2663532	0.89[ASN][1000 genomes]
rs2663533	0.82[YRI][hapmap]
rs2663535	0.89[YRI][hapmap]
rs2663536	0.91[ASN][1000 genomes]
rs2663538	0.83[YRI][hapmap]
rs2663540	0.91[ASN][1000 genomes]
rs2663542	0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2663552	0.81[ASN][1000 genomes]
rs2663553	0.83[YRI][hapmap]
rs2663554	0.85[YRI][hapmap]
rs2663557	0.91[ASN][1000 genomes]
rs35372376	0.83[ASN][1000 genomes]
rs35551186	0.83[ASN][1000 genomes]
rs35573737	0.91[ASN][1000 genomes]
rs36004063	0.89[ASN][1000 genomes]
rs3784303	0.83[YRI][hapmap]
rs3784304	0.91[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs3825797	0.91[ASN][1000 genomes]
rs3825798	0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs3848132	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4142324	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4598846	0.96[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs6493469	0.82[YRI][hapmap]
rs67889301	0.92[ASN][1000 genomes]
rs71426053	0.83[ASN][1000 genomes]
rs7168385	0.83[YRI][hapmap]
rs7168846	0.83[YRI][hapmap]
rs7170036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170302	0.89[ASN][1000 genomes]
rs7170310	0.89[ASN][1000 genomes]
rs7170455	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs7170675	0.82[YRI][hapmap]
rs7176498	0.83[ASN][1000 genomes]
rs7177664	0.96[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs7180258	0.83[YRI][hapmap]
rs7181201	0.81[AFR][1000 genomes]
rs7181593	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs7182957	0.83[YRI][hapmap]
rs737031	0.90[JPT][hapmap]
rs8029155	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs8029369	0.85[YRI][hapmap]
rs8043017	0.88[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs936482	0.86[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
5	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv529339	chr15:51048579-51270372	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv428636	chr15:51154834-51298044	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv569403	chr15:51191421-51304373	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv1038778	chr15:51196641-51356728	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv904214	chr15:51204364-51535192	Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv569404	chr15:51234595-51294995	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51201800-51271600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:51210600-51298400	Weak transcription	Stomach Mucosa	stomach
3	chr15:51235200-51263800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:51242200-51254800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:51242800-51258200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:51243600-51256800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:51243600-51261400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:51243800-51283000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:51245600-51255400	Strong transcription	HSMM	muscle
10	chr15:51246800-51257800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:51248800-51254600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:51249800-51256000	Weak transcription	Spleen	Spleen
13	chr15:51249800-51257000	Weak transcription	Aorta	Aorta
14	chr15:51249800-51257000	Weak transcription	Gastric	stomach
15	chr15:51249800-51257000	Weak transcription	Pancreas	Pancrea
16	chr15:51249800-51260800	Weak transcription	Esophagus	oesophagus
17	chr15:51250200-51254600	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr15:51250200-51257000	Weak transcription	Lung	lung
19	chr15:51250200-51257200	Weak transcription	Fetal Stomach	stomach
20	chr15:51250400-51264800	Weak transcription	NHEK	skin
21	chr15:51251000-51256000	Weak transcription	Thymus	Thymus
22	chr15:51251000-51256800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:51251200-51255200	Weak transcription	Colonic Mucosa	Colon
24	chr15:51251200-51256800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:51251200-51257000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:51251600-51257800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:51251600-51259600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr15:51251600-51261200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:51251800-51255200	Weak transcription	Left Ventricle	heart
30	chr15:51251800-51256800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr15:51251800-51257800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:51251800-51259400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:51251800-51260000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:51252000-51257200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:51252200-51256800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:51252200-51256800	Weak transcription	Ovary	ovary
37	chr15:51252200-51260800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:51252200-51261200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:51252200-51262400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:51252200-51263400	Weak transcription	NHLF	lung
41	chr15:51252400-51255400	Weak transcription	Brain Substantia Nigra	brain
42	chr15:51252400-51257600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:51252400-51283800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr15:51252600-51255200	Weak transcription	HUVEC	blood vessel
45	chr15:51253000-51254800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr15:51253000-51256000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:51253200-51254600	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:51253200-51254800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
49	chr15:51253200-51257200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:51253200-51257400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links