Variant report

Variant	rs819007
Chromosome Location	chr7:16838215-16838216
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16836212..16838215-chr7:16926884..16928846,2	MCF-7	breast:
2	chr7:16835974..16838932-chr7:16840945..16844181,3	MCF-7	breast:
3	chr7:16835874..16837684-chr7:16837980..16840761,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227965	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10085386	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10253218	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10263864	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10264144	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10266810	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10275787	0.86[AMR][1000 genomes]
rs1149528	0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs1149529	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12154501	0.92[AMR][1000 genomes]
rs12699808	0.85[AMR][1000 genomes]
rs12699812	0.81[AMR][1000 genomes]
rs1357993	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1380384	0.84[ASW][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.89[AMR][1000 genomes]
rs1404965	0.87[AMR][1000 genomes]
rs1404970	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1404972	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1563782	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1608878	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1830068	1.00[ASW][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6461279	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6970631	0.87[AMR][1000 genomes]
rs706070	1.00[CEU][hapmap];0.80[TSI][hapmap]
rs706072	1.00[ASW][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs706074	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7780106	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7783269	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7791790	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7796749	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7803549	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7807024	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs818800	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs819009	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv887761	chr7:16834361-17732490	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv887762	chr7:16834361-17746628	Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv887763	chr7:16834361-17750811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16814400-16843800	Weak transcription	Small Intestine	intestine
2	chr7:16823600-16843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:16831800-16839200	Strong transcription	Placenta Amnion	Placenta Amnion
4	chr7:16832000-16839600	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr7:16832400-16840000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr7:16833600-16839600	Strong transcription	A549	lung
7	chr7:16834000-16842400	Weak transcription	Gastric	stomach
8	chr7:16834200-16839800	Strong transcription	Duodenum Mucosa	Duodenum
9	chr7:16835000-16844200	Weak transcription	Psoas Muscle	Psoas
10	chr7:16835600-16839000	Weak transcription	Fetal Heart	heart
11	chr7:16835800-16840000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:16837200-16838600	Strong transcription	Fetal Intestine Large	intestine
13	chr7:16837600-16838400	Genic enhancers	Stomach Mucosa	stomach
14	chr7:16837800-16838800	Genic enhancers	Fetal Intestine Small	intestine
15	chr7:16838000-16838600	Enhancers	K562	blood
16	chr7:16838200-16838400	Enhancers	Fetal Stomach	stomach
17	chr7:16838200-16839800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:16838200-16841200	Weak transcription	Colonic Mucosa	Colon

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