Variant report

Variant	rs8190615
Chromosome Location	chr10:26513260-26513261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12261671	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55961132	1.00[AMR][1000 genomes]
rs56125651	1.00[AMR][1000 genomes]
rs58702827	1.00[AMR][1000 genomes]
rs59219388	1.00[AMR][1000 genomes]
rs74126477	1.00[AMR][1000 genomes]
rs7894202	0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[AMR][1000 genomes]
rs7898712	1.00[AMR][1000 genomes]
rs8190618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190624	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26512000-26515200	Weak transcription	Brain Germinal Matrix	brain
2	chr10:26512600-26514200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26512800-26513600	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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