Variant report

Variant	rs8190637
Chromosome Location	chr10:26519239-26519240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2839676	0.93[MKK][hapmap]
rs59122563	0.91[AFR][1000 genomes]
rs8190611	1.00[ASW][hapmap]
rs8190639	0.89[AFR][1000 genomes]
rs8190641	0.91[AFR][1000 genomes]
rs8190646	0.96[LWK][hapmap];0.96[MKK][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26517600-26521800	Weak transcription	Brain Germinal Matrix	brain
2	chr10:26518800-26519600	Strong transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26519200-26557800	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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