Variant report

Variant	rs8191726
Chromosome Location	chr6:160429466-160429467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:160429329-160429547	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:160428770..160431223-chr6:160432809..160434404,3	K562	blood:

Variant related genes	Relation type
IGF2R	TF binding region
AIRN	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs8191881	1.00[YRI][hapmap]
rs8191885	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432970	chr6:160323589-160436589	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160400800-160461000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:160401600-160437200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:160402200-160431800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:160405800-160445000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:160407200-160431800	Weak transcription	Aorta	Aorta
6	chr6:160408000-160434800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:160410400-160434600	Weak transcription	Hela-S3	cervix
8	chr6:160411000-160432000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:160411200-160432200	Weak transcription	HMEC	breast
10	chr6:160411200-160432200	Weak transcription	NH-A	brain
11	chr6:160414000-160430800	Weak transcription	NHDF-Ad	bronchial
12	chr6:160414000-160435400	Weak transcription	Brain Angular Gyrus	brain
13	chr6:160414000-160445200	Weak transcription	Brain Anterior Caudate	brain
14	chr6:160414200-160430000	Weak transcription	Brain Substantia Nigra	brain
15	chr6:160414200-160431200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:160414400-160430800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:160417600-160431200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:160417800-160445200	Weak transcription	Fetal Heart	heart
19	chr6:160418000-160430600	Weak transcription	HSMM	muscle
20	chr6:160418200-160431000	Weak transcription	HSMMtube	muscle
21	chr6:160418400-160437200	Weak transcription	A549	lung
22	chr6:160418600-160429600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:160418600-160480400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr6:160419200-160429800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:160420600-160431200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:160420800-160431200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:160421000-160431200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:160421200-160430200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr6:160421400-160429600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:160421800-160432200	Weak transcription	Osteobl	bone
31	chr6:160423000-160431000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:160423200-160429600	Weak transcription	Primary B cells from cord blood	blood
33	chr6:160424200-160430000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:160424200-160448200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:160425000-160435400	Weak transcription	Stomach Mucosa	stomach
36	chr6:160425400-160431200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:160425600-160431200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:160425800-160431000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:160426000-160431200	Weak transcription	Right Atrium	heart
40	chr6:160426200-160429800	Weak transcription	Primary T cells from cord blood	blood
41	chr6:160426200-160434200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:160426200-160445000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:160426400-160431200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr6:160426600-160430000	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:160426600-160432200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr6:160427000-160429800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:160427200-160431000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:160427400-160429600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:160427400-160429600	Weak transcription	K562	blood
50	chr6:160427400-160430000	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links