Variant report

Variant	rs8191855
Chromosome Location	chr6:160485060-160485061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10080371	1.00[EUR][1000 genomes]
rs10945650	0.90[JPT][hapmap]
rs1116262	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2230044	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2282137	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2282143	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2297359	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2297360	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2297361	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2777355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28691144	0.82[ASN][1000 genomes]
rs3777401	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777402	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777406	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3798170	1.00[EUR][1000 genomes]
rs3798175	1.00[EUR][1000 genomes]
rs6911252	0.84[CHB][hapmap];1.00[EUR][1000 genomes]
rs6925867	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598455	1.00[EUR][1000 genomes]
rs8191893	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8191912	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8191921	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8191959	0.92[CHB][hapmap];1.00[EUR][1000 genomes]
rs9456502	1.00[EUR][1000 genomes]
rs9457816	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457829	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9457833	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9457834	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9457839	0.84[CHB][hapmap];1.00[EUR][1000 genomes]
rs9457840	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160444200-160490400	Weak transcription	HUVEC	blood vessel
2	chr6:160444200-160521600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:160449800-160489400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:160453000-160534600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:160455800-160532000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:160459200-160501200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:160459600-160519200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:160460400-160486400	Strong transcription	H9 Cell Line	embryonic stem cell
9	chr6:160460600-160500800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:160460800-160486800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:160460800-160520200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:160460800-160520200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:160461000-160490400	Strong transcription	Duodenum Mucosa	Duodenum
14	chr6:160461000-160497400	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr6:160461000-160500600	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:160461200-160500800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:160463800-160486400	Strong transcription	Stomach Smooth Muscle	stomach
18	chr6:160464400-160519800	Strong transcription	Lung	lung
19	chr6:160464600-160531800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:160465400-160486000	Strong transcription	Adipose Nuclei	Adipose
21	chr6:160465400-160486800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:160465600-160530800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:160466000-160521000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:160466200-160494800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:160466800-160486800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:160469000-160489400	Weak transcription	Hela-S3	cervix
27	chr6:160469600-160493400	Strong transcription	Fetal Muscle Trunk	muscle
28	chr6:160472600-160486800	Strong transcription	Thymus	Thymus
29	chr6:160472600-160489000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:160472800-160486600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:160472800-160489400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:160472800-160489600	Strong transcription	Dnd41	blood
33	chr6:160473200-160488000	Strong transcription	Fetal Muscle Leg	muscle
34	chr6:160474200-160486400	Strong transcription	Brain Germinal Matrix	brain
35	chr6:160474200-160486400	Strong transcription	Fetal Brain Female	brain
36	chr6:160474200-160486400	Strong transcription	Fetal Lung	lung
37	chr6:160474200-160486400	Strong transcription	HSMMtube	muscle
38	chr6:160474200-160486600	Strong transcription	Brain Cingulate Gyrus	brain
39	chr6:160474200-160486800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:160474200-160486800	Strong transcription	Primary B cells from cord blood	blood
41	chr6:160474200-160486800	Strong transcription	Primary T cells from cord blood	blood
42	chr6:160474200-160486800	Strong transcription	Osteobl	bone
43	chr6:160474200-160501200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr6:160474200-160519600	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:160474200-160519800	Strong transcription	Fetal Stomach	stomach
46	chr6:160474400-160486800	Strong transcription	Primary B cells from peripheral blood	blood
47	chr6:160474400-160520600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr6:160474600-160486200	Strong transcription	Left Ventricle	heart
49	chr6:160474600-160486600	Strong transcription	Brain Anterior Caudate	brain
50	chr6:160474600-160486800	Strong transcription	K562	blood

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