Variant report

Variant	rs820567
Chromosome Location	chr3:112462163-112462164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112358089..112359762-chr3:112460166..112463073,2	MCF-7	breast:
2	chr3:112461762..112464702-chr3:112469113..112471587,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4682116	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs820542	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs820553	0.85[EUR][1000 genomes]
rs820559	0.85[EUR][1000 genomes]
rs820563	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112454200-112463800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:112456400-112464000	Weak transcription	K562	blood
3	chr3:112458400-112465600	Weak transcription	NHLF	lung
4	chr3:112458400-112467800	Weak transcription	Stomach Mucosa	stomach
5	chr3:112458800-112467200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:112459000-112463800	Weak transcription	Thymus	Thymus
7	chr3:112459000-112464000	Weak transcription	GM12878-XiMat	blood
8	chr3:112459000-112467000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:112459000-112470600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:112459200-112463000	Weak transcription	Fetal Thymus	thymus
11	chr3:112459200-112466400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:112459200-112467800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:112459800-112462600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:112460200-112464800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:112460800-112465600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:112461200-112462600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:112461200-112462800	Weak transcription	Osteobl	bone
18	chr3:112461200-112463000	Weak transcription	NHDF-Ad	bronchial
19	chr3:112461400-112462600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:112461400-112463000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr3:112461400-112466400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr3:112461400-112466400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:112461800-112465800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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