Variant report

Variant	rs820807
Chromosome Location	chr16:80380878-80380879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1038404	1.00[EUR][1000 genomes]
rs1038405	1.00[AMR][1000 genomes]
rs1094136	1.00[AMR][1000 genomes]
rs1094139	1.00[AMR][1000 genomes]
rs16952746	1.00[EUR][1000 genomes]
rs16952854	1.00[EUR][1000 genomes]
rs16952860	1.00[EUR][1000 genomes]
rs1825391	1.00[AMR][1000 genomes]
rs2203799	1.00[AMR][1000 genomes]
rs2626630	1.00[AMR][1000 genomes]
rs2626644	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2626649	1.00[AMR][1000 genomes]
rs2626650	1.00[AMR][1000 genomes]
rs2654465	1.00[AMR][1000 genomes]
rs2654469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2679316	1.00[AMR][1000 genomes]
rs7191338	1.00[AMR][1000 genomes]
rs7194633	1.00[AMR][1000 genomes]
rs7197210	1.00[EUR][1000 genomes]
rs7205407	1.00[AMR][1000 genomes]
rs820806	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9930292	1.00[AMR][1000 genomes]
rs9937948	1.00[EUR][1000 genomes]
rs9940243	1.00[EUR][1000 genomes]
rs9940737	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061068	chr16:80207546-80537052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv949197	chr16:80284557-80456403	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1064628	chr16:80286004-80406177	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv542986	chr16:80286004-80406177	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2762333	chr16:80307755-80509983	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1056026	chr16:80317627-80471469	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv542987	chr16:80317627-80471469	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv906999	chr16:80335933-80387019	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv833299	chr16:80341745-80549683	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv521087	chr16:80379730-80381924	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80378800-80381000	Enhancers	Fetal Stomach	stomach
2	chr16:80379600-80381000	Enhancers	Fetal Muscle Leg	muscle
3	chr16:80379600-80381000	Enhancers	Osteobl	bone
4	chr16:80379600-80382000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr16:80379800-80381000	Enhancers	HSMM	muscle
6	chr16:80379800-80381600	Weak transcription	Ovary	ovary
7	chr16:80379800-80381800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr16:80380800-80382000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr16:80380800-80382000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr16:80380800-80383600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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