Variant report

Variant	rs820837
Chromosome Location	chr5:73997973-73997974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:73979980..73983407-chr5:73996490..74001343,5	K562	blood:

Variant related genes	Relation type
ENSG00000049860	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs820839	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598653	chr5:73992881-74095542	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73982000-74002200	Weak transcription	Fetal Brain Female	brain
2	chr5:73982000-74017400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:73982000-74061800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:73982200-74020600	Weak transcription	Fetal Brain Male	brain
5	chr5:73982400-73998200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:73982400-73999400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:73982400-74002200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:73982600-73999400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:73983000-74001000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:73983000-74001600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:73983000-74017400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr5:73983000-74027000	Weak transcription	Fetal Heart	heart
13	chr5:73983200-74002200	Weak transcription	Esophagus	oesophagus
14	chr5:73983200-74030200	Weak transcription	Small Intestine	intestine
15	chr5:73983400-73999000	Weak transcription	Colonic Mucosa	Colon
16	chr5:73983400-73999200	Weak transcription	Psoas Muscle	Psoas
17	chr5:73983400-74016000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr5:73984400-74002200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr5:73984600-74000400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr5:73984600-74001000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:73984600-74001600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr5:73984600-74002600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr5:73985000-74002600	Strong transcription	Duodenum Mucosa	Duodenum
24	chr5:73985200-74002600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:73987200-74017400	Weak transcription	Fetal Kidney	kidney
26	chr5:73987400-73998200	Weak transcription	HSMM	muscle
27	chr5:73987600-74014800	Weak transcription	Fetal Lung	lung
28	chr5:73987800-73998200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr5:73987800-73999400	Weak transcription	Hela-S3	cervix
30	chr5:73988400-74021000	Weak transcription	Right Ventricle	heart
31	chr5:73989200-73998600	Weak transcription	Fetal Muscle Leg	muscle
32	chr5:73989400-73998200	Weak transcription	K562	blood
33	chr5:73989600-74001000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:73989800-74000600	Weak transcription	HUVEC	blood vessel
35	chr5:73989800-74002200	Weak transcription	Brain Angular Gyrus	brain
36	chr5:73989800-74002600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr5:73990000-73999000	Weak transcription	Lung	lung
38	chr5:73990000-74016200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr5:73990200-73998200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr5:73990200-73998200	Weak transcription	NHEK	skin
41	chr5:73990200-73999000	Weak transcription	Pancreas	Pancrea
42	chr5:73990400-73998200	Weak transcription	HepG2	liver
43	chr5:73990400-74013600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr5:73990600-73998200	Weak transcription	Primary T cells from cord blood	blood
45	chr5:73991400-74000800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr5:73991600-74002200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr5:73991800-74002400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:73992800-74000200	Strong transcription	Fetal Intestine Small	intestine
49	chr5:73993000-74001200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr5:73993000-74002200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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