Variant report

Variant	rs822489
Chromosome Location	chr1:155822721-155822722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155821549..155823556-chr1:155827690..155829206,2	K562	blood:
2	chr1:155821775..155825361-chr1:155825507..155828654,6	MCF-7	breast:
3	chr1:155656761..155658571-chr1:155822378..155824933,2	K562	blood:

Variant related genes	Relation type
ENSG00000132676	Chromatin interaction
ENSG00000116580	Chromatin interaction
ENSG00000163374	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1749415	0.95[AFR][1000 genomes]
rs1749417	0.85[AFR][1000 genomes]
rs2363012	0.82[AFR][1000 genomes]
rs2477541	0.84[AFR][1000 genomes]
rs4253908	0.83[AFR][1000 genomes]
rs6684460	0.86[AFR][1000 genomes]
rs708612	0.81[AFR][1000 genomes]
rs7530726	0.81[AFR][1000 genomes]
rs822016	0.85[AFR][1000 genomes]
rs822020	0.85[AFR][1000 genomes]
rs822488	0.81[AFR][1000 genomes]
rs822495	0.81[AFR][1000 genomes]
rs822499	0.81[AFR][1000 genomes]
rs822500	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1003170	chr1:155762204-155836564	Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155783600-155823000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:155792200-155826000	Weak transcription	Stomach Mucosa	stomach
3	chr1:155792400-155826600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:155792600-155822800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:155796800-155822800	Weak transcription	Small Intestine	intestine
6	chr1:155803800-155826000	Weak transcription	Right Atrium	heart
7	chr1:155808000-155826000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:155810000-155825200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr1:155810400-155825400	Strong transcription	Fetal Stomach	stomach
10	chr1:155810600-155825400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr1:155811400-155825000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:155812400-155825400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr1:155812800-155825400	Strong transcription	Fetal Thymus	thymus
14	chr1:155813000-155825400	Strong transcription	Thymus	Thymus
15	chr1:155813200-155826200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:155813600-155826200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:155813800-155826000	Weak transcription	Right Ventricle	heart
18	chr1:155815200-155825400	Strong transcription	Fetal Intestine Small	intestine
19	chr1:155815200-155825800	Weak transcription	Fetal Heart	heart
20	chr1:155815600-155822800	Weak transcription	Colon Smooth Muscle	Colon
21	chr1:155815800-155823000	Weak transcription	HSMMtube	muscle
22	chr1:155815800-155826000	Weak transcription	Psoas Muscle	Psoas
23	chr1:155817200-155822800	Weak transcription	NH-A	brain
24	chr1:155817200-155825400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:155817200-155825600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:155817400-155823200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr1:155818200-155825200	Strong transcription	Primary B cells from peripheral blood	blood
28	chr1:155818400-155825000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr1:155818600-155822800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr1:155819000-155824400	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr1:155819400-155825400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:155819400-155825400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:155819400-155825600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:155819600-155824600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr1:155819600-155825400	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr1:155819600-155825400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:155819800-155823600	Strong transcription	Brain Angular Gyrus	brain
38	chr1:155819800-155823600	Genic enhancers	Dnd41	blood
39	chr1:155819800-155824800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:155819800-155825000	Strong transcription	Osteobl	bone
41	chr1:155819800-155825400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr1:155819800-155825400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:155819800-155825400	Strong transcription	Liver	Liver
44	chr1:155819800-155825600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr1:155820000-155824600	Strong transcription	Fetal Intestine Large	intestine
46	chr1:155820000-155824800	Strong transcription	Adipose Nuclei	Adipose
47	chr1:155820000-155825200	Strong transcription	Placenta	Placenta
48	chr1:155820000-155825400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:155820000-155825400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr1:155820000-155825400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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