Variant report

Variant	rs822507
Chromosome Location	chr1:155849720-155849721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155848294..155850394-chr1:155945228..155948105,2	K562	blood:

Variant related genes	Relation type
ENSG00000116584	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1094558	0.93[EUR][1000 genomes]
rs6427292	0.82[AFR][1000 genomes]
rs71628695	0.81[EUR][1000 genomes]
rs822506	0.88[EUR][1000 genomes]
rs822516	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs822519	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155830000-155869000	Weak transcription	Gastric	stomach
2	chr1:155830400-155865800	Weak transcription	Esophagus	oesophagus
3	chr1:155830600-155850200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:155830600-155866800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:155830800-155850400	Weak transcription	Adipose Nuclei	Adipose
6	chr1:155830800-155852000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr1:155831000-155850000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:155831000-155851000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:155831000-155862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr1:155831000-155862800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:155831000-155863000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr1:155831200-155862800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr1:155831400-155859000	Weak transcription	HUVEC	blood vessel
14	chr1:155834600-155850200	Weak transcription	HSMM	muscle
15	chr1:155836400-155866400	Weak transcription	Primary B cells from cord blood	blood
16	chr1:155837600-155863000	Weak transcription	Colonic Mucosa	Colon
17	chr1:155840000-155850200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr1:155840400-155850000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr1:155841200-155850200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr1:155841400-155850000	Weak transcription	NHLF	lung
21	chr1:155841400-155850200	Weak transcription	Ovary	ovary
22	chr1:155841400-155863000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr1:155841600-155849800	Weak transcription	Left Ventricle	heart
24	chr1:155841600-155850200	Weak transcription	Colon Smooth Muscle	Colon
25	chr1:155841600-155850600	Weak transcription	NHDF-Ad	bronchial
26	chr1:155841800-155850000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:155841800-155850200	Weak transcription	HSMMtube	muscle
28	chr1:155841800-155850400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:155841800-155850600	Weak transcription	Spleen	Spleen
30	chr1:155841800-155869200	Weak transcription	Right Ventricle	heart
31	chr1:155842600-155863400	Weak transcription	Right Atrium	heart
32	chr1:155842800-155850200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:155842800-155852600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr1:155842800-155853400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr1:155844000-155850000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr1:155844000-155850200	Weak transcription	Osteobl	bone
37	chr1:155844000-155852000	Strong transcription	Fetal Stomach	stomach
38	chr1:155844000-155853600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr1:155844000-155862200	Weak transcription	Lung	lung
40	chr1:155844200-155850200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr1:155844200-155850200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:155844200-155853600	Weak transcription	NH-A	brain
43	chr1:155844200-155854200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr1:155844200-155855400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr1:155844400-155850000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:155844400-155850000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr1:155844400-155850200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:155844400-155850200	Weak transcription	Fetal Muscle Leg	muscle
49	chr1:155844400-155874000	Weak transcription	Fetal Brain Male	brain
50	chr1:155845200-155853400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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