Variant report

Variant	rs822770
Chromosome Location	chr3:23032988-23032989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs616006	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs680930	0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs681025	0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs822770	RARB	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23030000-23034200	Weak transcription	Left Ventricle	heart
2	chr3:23030200-23038200	Weak transcription	Psoas Muscle	Psoas
3	chr3:23032600-23034200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:23032600-23041000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:23032800-23033400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:23032800-23033600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:23032800-23033600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:23032800-23033600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:23032800-23033800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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