Variant report
| Variant | rs822809 |
|---|---|
| Chromosome Location | chr12:75028447-75028448 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:74931443..74933195-chr12:75027637..75029931,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000257386 | Chromatin interaction |
| ENSG00000253719 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1389489 | 1.00[YRI][hapmap] |
| rs1493807 | 1.00[YRI][hapmap] |
| rs1563930 | 1.00[YRI][hapmap] |
| rs1873987 | 1.00[YRI][hapmap] |
| rs1873988 | 1.00[YRI][hapmap] |
| rs2131717 | 1.00[AFR][1000 genomes] |
| rs2252250 | 1.00[YRI][hapmap] |
| rs2605350 | 1.00[AFR][1000 genomes] |
| rs2605358 | 1.00[AFR][1000 genomes] |
| rs2605379 | 1.00[YRI][hapmap] |
| rs2605380 | 1.00[YRI][hapmap] |
| rs2613880 | 1.00[YRI][hapmap] |
| rs2613899 | 1.00[YRI][hapmap] |
| rs2641465 | 1.00[YRI][hapmap] |
| rs588875 | 1.00[YRI][hapmap] |
| rs590166 | 1.00[YRI][hapmap] |
| rs596999 | 1.00[YRI][hapmap] |
| rs625531 | 1.00[YRI][hapmap] |
| rs694314 | 1.00[YRI][hapmap] |
| rs822803 | 1.00[AFR][1000 genomes] |
| rs822806 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
