Variant report

Variant	rs825121
Chromosome Location	chr1:223464759-223464760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1341288	1.00[EUR][1000 genomes]
rs1417744	1.00[EUR][1000 genomes]
rs1713218	1.00[EUR][1000 genomes]
rs1772272	1.00[AMR][1000 genomes]
rs1856932	1.00[EUR][1000 genomes]
rs2253649	1.00[EUR][1000 genomes]
rs2487832	1.00[EUR][1000 genomes]
rs2793466	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28584917	1.00[EUR][1000 genomes]
rs73122236	1.00[EUR][1000 genomes]
rs73122238	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73122239	1.00[EUR][1000 genomes]
rs825119	1.00[EUR][1000 genomes]
rs825122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs825126	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223440800-223465600	Weak transcription	Ovary	ovary
2	chr1:223443800-223472600	Weak transcription	Gastric	stomach
3	chr1:223459000-223474200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:223460800-223473400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:223461200-223469600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:223462600-223465600	Weak transcription	Primary T cells from cord blood	blood
7	chr1:223464400-223466800	Weak transcription	Brain Angular Gyrus	brain
8	chr1:223464400-223472800	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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