Variant report

Variant	rs825460
Chromosome Location	chr12:124542264-124542265
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1686736	0.83[AFR][1000 genomes]
rs825470	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124538800-124542800	Weak transcription	Stomach Mucosa	stomach
2	chr12:124539200-124542400	Weak transcription	Fetal Brain Female	brain
3	chr12:124539200-124542400	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:124539400-124549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:124540200-124542600	Weak transcription	Fetal Kidney	kidney
6	chr12:124542000-124543200	Enhancers	Fetal Lung	lung
7	chr12:124542200-124542800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr12:124542200-124543200	Enhancers	Fetal Stomach	stomach
9	chr12:124542200-124543400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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