Variant report

Variant	rs825478
Chromosome Location	chr12:124572235-124572236
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF664-2	chr12:124570308-124573142	ENSG00000269923.1

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1686736	0.81[AFR][1000 genomes]
rs4930720	1.00[YRI][hapmap]
rs707335	0.88[AFR][1000 genomes]
rs7974706	0.88[AFR][1000 genomes]
rs825511	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv520633	chr12:124548394-124683205	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv518962	chr12:124561803-124583446	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124562400-124577400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:124568600-124592000	Weak transcription	Right Atrium	heart
3	chr12:124570000-124573800	Enhancers	Fetal Stomach	stomach
4	chr12:124570000-124577000	Weak transcription	Pancreas	Pancrea
5	chr12:124570200-124577800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:124570400-124573400	Enhancers	Fetal Brain Male	brain
7	chr12:124570800-124582200	Weak transcription	Fetal Brain Female	brain
8	chr12:124571000-124572400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:124571000-124572400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr12:124571200-124572800	Enhancers	Stomach Smooth Muscle	stomach
11	chr12:124571800-124573400	Enhancers	Fetal Lung	lung
12	chr12:124571800-124573400	Enhancers	Fetal Muscle Leg	muscle
13	chr12:124571800-124573400	Enhancers	Rectal Smooth Muscle	rectum
14	chr12:124572000-124572400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:124572000-124574600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr12:124572200-124572400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr12:124572200-124572600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr12:124572200-124573000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr12:124572200-124573000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:124572200-124573200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr12:124572200-124573200	Enhancers	Colon Smooth Muscle	Colon
22	chr12:124572200-124573400	Enhancers	Fetal Kidney	kidney

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