Variant report
| Variant | rs825495 |
|---|---|
| Chromosome Location | chr12:124589459-124589460 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10846602 | 1.00[AMR][1000 genomes] |
| rs10846605 | 1.00[AMR][1000 genomes] |
| rs1716422 | 1.00[AMR][1000 genomes] |
| rs2451320 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs448623 | 1.00[AMR][1000 genomes] |
| rs530382 | 1.00[AMR][1000 genomes] |
| rs6488919 | 1.00[AMR][1000 genomes] |
| rs694119 | 1.00[AMR][1000 genomes] |
| rs707337 | 1.00[AMR][1000 genomes] |
| rs7957701 | 1.00[AMR][1000 genomes] |
| rs825487 | 1.00[AMR][1000 genomes] |
| rs825488 | 1.00[AMR][1000 genomes] |
| rs825491 | 1.00[AMR][1000 genomes] |
| rs825492 | 1.00[AMR][1000 genomes] |
| rs825493 | 1.00[AMR][1000 genomes] |
| rs825494 | 1.00[AMR][1000 genomes] |
| rs825496 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs825502 | 1.00[AMR][1000 genomes] |
| rs825503 | 1.00[AMR][1000 genomes] |
| rs862221 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv455734 | chr12:124511908-124772515 | Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv560538 | chr12:124511908-124772515 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv520633 | chr12:124548394-124683205 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:124568600-124592000 | Weak transcription | Right Atrium | heart |
