Variant report

Variant	rs826241
Chromosome Location	chr3:24327069-24327070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1095483	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1700936	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2360956	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2360957	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826239	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24311000-24335200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24312200-24333800	Weak transcription	Fetal Intestine Large	intestine
4	chr3:24314800-24327200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:24314800-24328400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:24317400-24344600	Weak transcription	HepG2	liver
7	chr3:24318200-24327400	Weak transcription	Liver	Liver
8	chr3:24318800-24335200	Weak transcription	Aorta	Aorta
9	chr3:24320600-24330200	Weak transcription	NHDF-Ad	bronchial
10	chr3:24323400-24338200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:24324600-24329400	Weak transcription	Stomach Mucosa	stomach
12	chr3:24326800-24331000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:24327000-24334600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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