Variant report

Variant	rs826724
Chromosome Location	chr8:59748137-59748138
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2594964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726553	0.82[JPT][hapmap]
rs826726	0.83[ASN][1000 genomes]
rs826728	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs826730	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs826733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59715200-59757400	Weak transcription	Fetal Intestine Large	intestine
2	chr8:59720600-59754800	Weak transcription	Small Intestine	intestine
3	chr8:59720800-59762600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:59722400-59757200	Strong transcription	Dnd41	blood
5	chr8:59729600-59754800	Weak transcription	Gastric	stomach
6	chr8:59730800-59770800	Strong transcription	Fetal Thymus	thymus
7	chr8:59732200-59755200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:59739000-59753200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:59739400-59748200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr8:59739400-59748600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:59739400-59749200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:59739400-59750000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:59739600-59748200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:59740800-59749000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr8:59745000-59751000	Strong transcription	Primary T cells from cord blood	blood
16	chr8:59745600-59770800	Weak transcription	Fetal Kidney	kidney
17	chr8:59745800-59770800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:59746000-59753800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr8:59746400-59748600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:59746400-59751000	Strong transcription	Thymus	Thymus
21	chr8:59746400-59773200	Weak transcription	Fetal Intestine Small	intestine
22	chr8:59746600-59752800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr8:59746600-59754800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:59746600-59763600	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr8:59746800-59748600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:59746800-59763600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr8:59747000-59748200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:59747000-59748400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr8:59747000-59749800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr8:59747000-59750000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr8:59747000-59755000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr8:59747000-59755800	Weak transcription	Fetal Lung	lung
33	chr8:59747000-59757600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr8:59747200-59748200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:59747200-59749000	Weak transcription	Brain Germinal Matrix	brain
36	chr8:59747200-59749800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr8:59747200-59749800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:59747200-59754800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr8:59747400-59748400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr8:59747400-59748400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:59747400-59748600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr8:59747400-59748600	Weak transcription	Fetal Stomach	stomach
43	chr8:59747400-59748600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr8:59747400-59748600	Weak transcription	Hela-S3	cervix
45	chr8:59747400-59750000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:59747400-59751000	Weak transcription	Lung	lung
47	chr8:59747400-59753200	Weak transcription	A549	lung
48	chr8:59747400-59753600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr8:59747400-59754400	Weak transcription	NH-A	brain
50	chr8:59747400-59754400	Weak transcription	Osteobl	bone

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