Variant report

Variant	rs826963
Chromosome Location	chr19:37265852-37265853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37177766..37179816-chr19:37265277..37267800,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225975	Chromatin interaction
ENSG00000189042	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1227819	0.80[AMR][1000 genomes]
rs1227820	0.80[AMR][1000 genomes]
rs1673086	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv3517005	chr19:37193712-37364110	Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	esv3517004	chr19:37193762-37363960	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
12	esv3517006	chr19:37193762-37363960	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv911650	chr19:37241141-37331614	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	esv1829205	chr19:37252164-37285622	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a
15	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv1827511	chr19:37261867-37283594	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37264400-37266000	Weak transcription	Placenta	Placenta
2	chr19:37264400-37266200	Weak transcription	Fetal Intestine Large	intestine
3	chr19:37264400-37266400	Weak transcription	Fetal Muscle Leg	muscle
4	chr19:37264400-37266400	Weak transcription	Gastric	stomach
5	chr19:37264400-37266400	Weak transcription	Left Ventricle	heart
6	chr19:37264400-37266400	Weak transcription	Ovary	ovary
7	chr19:37264400-37266400	Weak transcription	Right Atrium	heart
8	chr19:37264400-37266600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr19:37264600-37266000	Weak transcription	Fetal Thymus	thymus
10	chr19:37264600-37266200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr19:37264600-37266200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr19:37264600-37266200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr19:37264600-37266200	Weak transcription	Adipose Nuclei	Adipose
14	chr19:37264600-37266200	Weak transcription	Brain Angular Gyrus	brain
15	chr19:37264600-37266200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr19:37264600-37266200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr19:37264600-37266200	Weak transcription	Brain Substantia Nigra	brain
18	chr19:37264600-37266200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr19:37264600-37266200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr19:37264600-37266200	Weak transcription	HUVEC	blood vessel
21	chr19:37264600-37266200	Weak transcription	NHDF-Ad	bronchial
22	chr19:37264600-37266400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr19:37264600-37266400	Weak transcription	Brain Anterior Caudate	brain
24	chr19:37264600-37266400	Weak transcription	Brain Hippocampus Middle	brain
25	chr19:37264600-37266400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr19:37264600-37266400	Weak transcription	Fetal Lung	lung
27	chr19:37264600-37266400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr19:37264600-37266400	Weak transcription	Pancreas	Pancrea
29	chr19:37264600-37266400	Weak transcription	Right Ventricle	heart
30	chr19:37264600-37266400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr19:37264600-37266400	Weak transcription	HSMM	muscle
32	chr19:37264600-37266400	Weak transcription	NH-A	brain
33	chr19:37264600-37266400	Weak transcription	Osteobl	bone
34	chr19:37264600-37266600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr19:37264600-37266600	Weak transcription	Fetal Kidney	kidney
36	chr19:37264600-37274800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr19:37264800-37266400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr19:37264800-37267600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
39	chr19:37265000-37267400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr19:37265000-37267800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr19:37265000-37268400	ZNF genes & repeats	Liver	Liver
42	chr19:37265200-37266200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr19:37265200-37267400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
44	chr19:37265200-37267400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr19:37265200-37268600	ZNF genes & repeats	Dnd41	blood
46	chr19:37265400-37266200	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr19:37265400-37266400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr19:37265600-37266000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr19:37265600-37267600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
50	chr19:37265600-37270200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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