Variant report

Variant	rs828056
Chromosome Location	chr1:97612930-97612931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11165808	0.84[AFR][1000 genomes]
rs12066332	0.86[AFR][1000 genomes]
rs12081472	0.84[AFR][1000 genomes]
rs12083975	0.86[AFR][1000 genomes]
rs12088567	0.80[AFR][1000 genomes]
rs12092946	0.84[AFR][1000 genomes]
rs12093141	0.82[AFR][1000 genomes]
rs1514496	0.87[AFR][1000 genomes]
rs1709411	0.87[AFR][1000 genomes]
rs4489611	0.84[AFR][1000 genomes]
rs67908389	0.87[AFR][1000 genomes]
rs67915441	0.84[AFR][1000 genomes]
rs72726631	0.84[AFR][1000 genomes]
rs72965876	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv530048	chr1:97457175-98031501	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007950	chr1:97466488-98021146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830692	chr1:97501492-97625153	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97563600-97619200	Weak transcription	Dnd41	blood
2	chr1:97564200-97632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:97585600-97621800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:97597400-97619600	Weak transcription	Liver	Liver
5	chr1:97604000-97620000	Weak transcription	Pancreas	Pancrea
6	chr1:97604400-97614800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:97604400-97629000	Weak transcription	Primary B cells from cord blood	blood
8	chr1:97604600-97614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:97606200-97626600	Weak transcription	Ovary	ovary
10	chr1:97609200-97627800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr1:97610000-97614000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr1:97610200-97614000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr1:97610400-97613200	Strong transcription	Primary T cells from cord blood	blood
14	chr1:97610600-97613600	Enhancers	Brain Substantia Nigra	brain
15	chr1:97611200-97613200	Enhancers	Brain Germinal Matrix	brain
16	chr1:97611400-97613400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr1:97611400-97613600	Enhancers	Brain Hippocampus Middle	brain
18	chr1:97611600-97615000	Weak transcription	HSMM	muscle
19	chr1:97611600-97639600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:97612000-97615800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:97612200-97613400	Weak transcription	NHDF-Ad	bronchial
22	chr1:97612200-97626600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:97612400-97613200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:97612600-97613800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links