Variant report

Variant	rs828591
Chromosome Location	chr3:98459511-98459512
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs278364	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs278371	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs704580	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs828600	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390386	chr3:98174549-98579953	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv470783	chr3:98431225-98466222	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98453400-98460200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:98453400-98463200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:98453400-98463400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:98453400-98468600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:98453400-98469400	Weak transcription	Aorta	Aorta
6	chr3:98453800-98459800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:98453800-98459800	Weak transcription	HMEC	breast
8	chr3:98453800-98464200	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:98454000-98461800	Weak transcription	Placenta	Placenta
10	chr3:98454000-98464600	Weak transcription	Fetal Brain Male	brain
11	chr3:98454200-98465800	Weak transcription	Fetal Kidney	kidney
12	chr3:98454400-98478000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:98454600-98462000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:98454800-98464200	Weak transcription	Brain Angular Gyrus	brain
15	chr3:98455400-98463000	Weak transcription	Right Atrium	heart
16	chr3:98456000-98462800	Weak transcription	Right Ventricle	heart
17	chr3:98456600-98479600	Weak transcription	Dnd41	blood
18	chr3:98456800-98469800	Weak transcription	Thymus	Thymus
19	chr3:98457400-98463200	Weak transcription	Left Ventricle	heart
20	chr3:98457400-98467800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:98457600-98460000	Enhancers	HUVEC	blood vessel
22	chr3:98457800-98460000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:98457800-98474400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:98458000-98461200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:98458200-98461200	Enhancers	Fetal Heart	heart
26	chr3:98458400-98462600	Weak transcription	GM12878-XiMat	blood
27	chr3:98458400-98474800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:98459000-98467200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:98459200-98461400	Enhancers	HepG2	liver
30	chr3:98459200-98462800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:98459400-98460200	Weak transcription	Liver	Liver
32	chr3:98459400-98469400	Weak transcription	Pancreas	Pancrea

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