Variant report

Variant	rs831684
Chromosome Location	chr12:104020461-104020462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1018033	0.83[EUR][1000 genomes]
rs1427798	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1650123	0.82[AMR][1000 genomes]
rs2673654	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs703614	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs703616	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs703618	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs703619	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs703624	0.82[AMR][1000 genomes]
rs703627	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052275	chr12:104008918-104044241	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104011600-104020800	Weak transcription	Spleen	Spleen
2	chr12:104016000-104022200	Weak transcription	Right Atrium	heart
3	chr12:104020000-104021200	Enhancers	HSMM	muscle
4	chr12:104020000-104021600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr12:104020200-104021000	Enhancers	A549	lung
6	chr12:104020200-104021400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr12:104020200-104021600	Enhancers	Rectal Smooth Muscle	rectum
8	chr12:104020200-104021600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr12:104020200-104021600	Enhancers	HSMMtube	muscle
10	chr12:104020200-104022200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr12:104020400-104020800	Enhancers	Gastric	stomach
12	chr12:104020400-104021200	Enhancers	Right Ventricle	heart
13	chr12:104020400-104022200	Enhancers	Fetal Heart	heart
14	chr12:104020400-104022400	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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